similar to: Custom axis function in lattice:::xyplot

Dear list, This is related to the change discussed in the thread "no visible binding for global variables for data sets in a package". I went to look at the Check results for one of my packages (analogue) on CRAN: http://cran.r-project.org/web/checks/check_results_analogue.html Under the r-devel build machines I'm seeing a lot of things like this: Stratiplot.default :

Hi All, I am looking for help in rotating species titles produced using the strat.plot( ) function in the rioja package. This function produces a stratigraphic plot of paleoenvironmental data. Currently the titles of each species are plotted vertically while they are typically plotted at a 45 degree angle in other programs. Does anyone have any idea of how to rotates these titles? Below is an

Hi, I make a graphic using xyplot, it is very good. xyplot((ocorrencia/isca)~frag|especie) But I need to plot a curve for each especie's plot. I try to use panel.abline and others panel., but I dont succeed. I need to plot the function exp(a+b*x+c*x^2)/1+exp(a+b*x+c*x^2), a b and c are different for each especie. Normally I use the curve function to add a curve in a points

Hi, I would like to add confidence intervales to an ANCOVA with 2 covariates when using xyplot. What would be a good way of accomplishing this? --8<---------------cut here---------------start------------->8--- rm(list = ls(all = TRUE)) rm(list = c(ls())) library(lattice) ## 1. generate data random <- rnorm(200) y <- abs(random) x1.cont <- abs(random) x2.fac <-

Hi All, I have a data set which I need to plot and show the values of one of the variables as a second x-axis. library(lattice) year<-c(2001,2002,2003,2004,2005,2006) fac<-c("arts","arts","arts","sci","sci","sci") staff<-c(95,98,99,32,31,36) part<-c(32,31,33,15,16,14) df1<-data.frame(year,fac,staff,part)

Hello, I'm making a simple plot using xYplot in the Hmisc library and having problems with labeling the values on the x-axis. Using the reproducible example below, how can I have the text (jan, feb,mar, etc.) in place of 1:12. Thanks, AB x <- c(seq(0,0.5,by=0.1),seq(0.5,0,by=-0.1)) ci <- rnorm(12,0,sd=0.1) xupper <- x + ci xlower <- x - ci mo.fac <- c("jan",

Hi, I have a simple task I can't figure out. I'd like to take some measurements I made, e.g.: year (y-axis) 1 2 3 4 5 6 counts (x-axis) 10 10 20 30 40 50 And then, make a barplot with the x-axis ticks (representing the borders between years) between the bars. However, barplot seems to force you to make the x-axis arbitrary categories. I want it to be continuous (as in a

Hi everyone I want a square scatterplot with abline(0,1) going exactly through the SW and NE corners. By "square" I mean that the plotting region is exactly square, and that the axis limits are identical. x <- 1:20 y <- x+rep(c(-1,1),10) lims <- range(c(x,y)) None of the following do this: plot(x,y) ; abline(0,1) #not square plot(x,y,asp=1);abline(0,1) #diagonal

Estimate region of highest probabilty density Dear R-community I have data consisting of x and y. To each pair (x,y) a z value (weight) is assigned. With kde2d I can estimate the densities on a regular grid and based on this make a contour plot (not considering the z-values). According to an earlier post in the list I adjusted the kde2d to kde2d.weighted (see code below) to estimate the

Dear List, I am thinking about ways in which I might analyse some stratigraphic data. The nature of the data series I have generates a number of issues: 1) The data I have in mind come from a sediment core sequence taken from the bottom of a lake. The sequence is sliced into a priori defined slices, in this case 0.2cm per slice. in this way a sequence of 0.2cm slices is produced for the

Dear list, I've recently came across a problem that I think I've solved and that I wanted to share with you for two reasons: - Maybe others come across the same problem. - Maybe someone has a much simpler solution that wants to share with me ;-) The problem is as follows: expand.grid() allows you to generate a data.frame with all combinations of a set of values, e.g.: >

Hello all, I'm trying to create a heatmap using 2 matrices I have: z and v. Both matrices represent different correlations for the same independent variables. The problem I have is that I wish to have the values from matrix z to be represented by color intensity while having the values from matrix v to be represented by circle size. I currently have the following in front of me and an unsure

Estimados, tengo un grafico al que debo anexar la leyenda en el costado derecho. Mi problema es que el titulo de la leyenda debe decir "Concentration (mM)" el que es muy largo y la ultima M sale cortada. No puedo abreviar la palabra porque justamente me rechazaron el grafico por que estaba abreviada esa palabra. Aqui pego el codigo con el que se hacen los graficos y anexo un archivo

Hello everyone I have problem with axis labels on graphs, I have my code as below: plot(0,0,xlim=c(1,ncol(PA)),ylim=c(1,nrow(PA)),main="Stratigraphic Range",xlab="Time Bins",ylab="Taxa",cex.axis=1.5,cex.lab=2,cex.main=2.5,mgp=c(5,1.5,0),xaxt="n") text(1:(length(strat_name)), y= 0, adj=1, srt=45,labels=strat_name,xpd=TRUE, cex=1) #adds text to x

Hello, I am lattice scatterplot that has 2 panels (could be a few more). Both panels have a y-axis label that is different on the left and right sides. However the right hand side axis labelling depends on which panel i'm in . (I am plotting two curves in one panel, the left y-axis has the scale for the red line and the right y-axis has the scale for the blue line I need to convert the

Hello, I would like to get the scales of y-axes dependent only on the data points in a particular panel. Have attached a test example below. When using 'relation="free"', it does not make the scales 'free', however when using 'relation="sliced"', I get a warning "Explicitly specified limits ignored in: limitsFromLimitlist(have.lim = have.ylim, lim

Ladies and Gentlemen, The first public (beta) release of the package stratigraph is now available on CRAN: http://cran.r-project.org/web/packages/stratigraph/index.html It includes tools for plotting pollen diagrams, an implementation of an evolutionary algorithm for drawing stratigraphic lines of correlation, and several other functions for the analysis and plotting of geological,

Ladies and Gentlemen, The first public (beta) release of the package stratigraph is now available on CRAN: http://cran.r-project.org/web/packages/stratigraph/index.html It includes tools for plotting pollen diagrams, an implementation of an evolutionary algorithm for drawing stratigraphic lines of correlation, and several other functions for the analysis and plotting of geological,

Hello, Can anyone tell me if there is a package which will allow me to write a package in R, then publish the package using WebServices? The idea is that I want to be able to pass a data set into R, have R perform the calculations, then send the result back to either a .Net application or a LIMS BASIC application. So far I see many packages that allow R to consume WebServices, but I haven't

In the HistData package, I have a data frame, PearsonLee, containing observations on heights of parent and child, in weighted form: library(HistData) > str(PearsonLee) 'data.frame': 746 obs. of 6 variables: $ child : num 59.5 59.5 59.5 60.5 60.5 61.5 61.5 61.5 61.5 61.5 ... $ parent : num 62.5 63.5 64.5 62.5 66.5 59.5 60.5 62.5 63.5 64.5 ... $ frequency: num 0.5 0.5