similar to: Counting Frequencies in Data Frame

Hi All, I’m trying to evaluate the frequency of different strings in each row of a data.frame : INPUT: ID G1 G2 G3 G4 … GN 1 AA BB AB AB … 2 BB AB AB AA … 3 AC CC AC AA … 4 BB BB BB BB… The number of different strings can vary in each row. My solution has been: for (i in 1:length(INPUT[,1])){ b=as.data.frame(table(t((INPUT[i,2:5])))) <some operations using the string values and

Hi everybody, I have a list, where every element of this list is a data frame. An example: Mylist<-list(A=data.frame, B=data.frame, C=data.frame, D=data.frame) I want to rbind some elements of this list. As an example: Output<-list(AB=data.frame, CD=data.frame) Where AB=rbind(A,B) CD=rbind(C,D) I’ve tried: f<-function(x){ for (i in

I have a data.frame object like: > data.frame(x=c('A','A','B','B'), y=c('Ab','Ac','Ba','Bd')) x y 1 A Ab 2 A Ac 3 B Ba 4 B Bd how could I create a tree structure object like this: |---Ab A---| _| |---Ac | | |---Ba B---| |---Bb Thanks, Zech [[alternative HTML version deleted]]

Hi everybody, I have a large dataframe similar to this one: knames <-c('ab', 'aa', 'ac', 'ad', 'ab', 'ac', 'aa', 'ad','ae', 'af') kdate <- as.Date( c('20111001', '20111102', '20101001', '20100315', '20101201', '20110105', '20101001', '20110504',

Dear R-helpers: I am trying to write a script that iterates through a dataframe that looks like this: Example dataset called "sample": names <- c("S1", "S2", "S3", "S4") X <- c("BB", "AB", "AB", "AA") Y <- c("BB", "BB", "AB", "AA") Z <- c("BB",

Hello, When I try: geno <-read.table("2500.geno.tab",header=TRUE,sep="\t",na.strings=".",quote=" ",comment.char="",colClasses=c("factor"),nrows=2501) I get, after hour(s) of work: Error: cannot allocate vector of size 9 Kb I have: Rgui.exe --max-mem-size=3Gb and multi(0)disk(0)rdisk(0)partition(1)\WINDOWS="Microsoft

Dear R-ers, I feel I am close, but can't get it quite right. Thanks a lot for your help! Dimitri # I have 2 data frames: x<-data.frame(a=c("aa","aa","ab","ab","ba","ba","bb","bb"),b=c(1:2,1:2,1:2,1:2),d=c(10,20,30,40,50,60,70,80))

We have a wireless network that uses 802.1x authentication, in which domain joined computers use their machine credentials to connect. Windows machines do this automatically, and until recently Linux computers could join using wicd, wpa-supplicant, and a simple script that would retrieve the machine password with tdbdump. ( specifically tdbdump -k SECRETS/MACHINE_PASSWORD/DOMAIN

Hi, I'm trying to generate a distance matrix between sample pairs (example below). I'm not very familiar with the loop command which I expect I will need for this. The example below demosntrates what I'd like to get out of the data - essentially, to calculate the proportion of positions where two samples differ. Any help much appreciated! Also, any notes on how the functions work

Hi, Thanks in advance for reading this post. I received some affymetrix genotyping data back recently (250K, Nsp array)…However, in order for me to do any analysis on this data set, I need to add append the annotation file to it. Basically I want to do something that looks like this: Snpfile(tab delimited): SNPID Genotype X Y 123 AA 13.4 1.2

Dear list, I have a long list of two vectors with some matching elements. I would like to line them up in two columns and have an NA in those positions of the second vector where a match is absent. With a simple example, I will explain my problem. (a<-1:6) (b<-c(5,2)) (m1<-match(a,b)) (ab<-cbind(a,m1)) m2<-numeric(length(m1)) for (i in 1:length(m1))

On Fri, Mar 7, 2014 at 2:33 AM, Vieri <rentorbuy at yahoo.com> wrote: > So I take it it's more of a DHCP hack in which: > 1- client boots and gets DHCP response from 10.215.144.7 with PXE syslinux info > 2- client loads pxelinux.0 menu and selects menu that chains to Altiris PXE menu except, instead of calling pxechain.com or pxechn.c32 with the Altiris server's IP address,

Hi, I try to make a plot like this: Y | | | o | o o | o o | o o |o o o |-------------------------------- 0 10 20 30 40 50 60 70 80 90 100 (A) 100 90 80 70 60 50 40 30 20 10 0 (B) or B 100 90 80 70 60 50 40 30 20 10 0 Y |-------------------------------- | | o

Has probado con cor(datos,use="pairwise.complete.obs") ??? > From: valeagui en outlook.es > To: cof en qualityexcellence.es; r-help-es en r-project.org > Date: Wed, 11 Nov 2015 15:13:55 +0000 > Subject: Re: [R-es] Problema con la lectura de datos > > Hola Carlos, muchas gracias....pero hago exactamente lo mismo que tu..y al intentar de hacer la matriz de

?Hola, A mí me funciona la importación directa. Previamente he guardado la hoja de Excel en .csv (separado por ";"). Y hago sin problemas la correlación entre dos variables (las dos primeras). > datIn <- read.csv("Variables.csv", header=T, as.is=T, sep=";", dec=",") > head(datIn) EMPRESAS AA AB AC AD AE AF AG AH AI

Hi all, I've a vector with entries, which are all of the same type, e.g. string: k <- c("bb", "bb", "bb", "aa", "cc", "cc") and want to create a second vector containing the number of each entry in k in the same order as in k, i.e. c(3, 1, 2) or: k <- c(5,5,5,5,2,2,4) => c(4,2,1) thanks

Hello,   is there a simple way to give all combinations for a given vector:   v<-c("a","b","c")   combination(v,v) becomes "aa","ab","ac","bb","bc","cc'   combination(v,v,v) becomes "aaa","aab","aac","abb",......     [[alternative HTML version deleted]]

I evaluated the Bayes factor in the k=2 allele case with a "triangular" prior under the null as in the example in the help file: HWETriangBF2(nvec=c(88,10,2)) [1] 0.4580336 When I swap the n11 entry and n22 entry of nvec, I received totally different Bayes factor: > > HWETriangBF2(nvec=c(2,10,88)) [1] 5.710153 > In my understanding, defining the genotype frequency as

Thank you Jeff. Your code works, as usual , perfectly. I am just wondering why if i put the whole code in one line, i get an error message. sdf2 <- lapply( sdf, function(z){z$Value <-ifelse(is.na(z$Value),z$Value[!is.na(z$Value)][1],z$Value)z}) error. unexpected symbol in sdf2 Thanks again EK On Mon, Jan 8, 2018 at 3:12 AM, Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote: >

I am trying to make a box plot and overlay it with a scatter plot from another data.frame. I was able to successfully create the boxplot, but when i tried using points(x~y...) the dots did not show up. example code aa<-(300,300,300,300,600,600,600,600,900,900,900,900) bb<-(13,12,14,11,56,44,34,75,22.,34,22,98,59,55,56) cc<-(13,12,14,11,56,44,34,75,22.,34,22,98,59,55,56)