similar to: ShortRead with BWA

Hi, I want to group a large list (20 million) of strings into categories based on string similarity? The specific problem is: given a list of DNA sequence as below ACTCCCGCCGTTCGCGCGCAGCATGATCCTG ACTCCCGCCGTTCGCGCGCNNNNNNNNNNNN CAGGATCATGCTGCGCGCGAACGGCGGGAGT CAGGATCATGCTGCGCGCGAANNNNNNNNNN CAGGATCATGCTGCGCGCGNNNNNNNNNNNN ...... ..... NNNNNNNCCGTTCGCGCGCAGCATGATCCTG

Hi, I understand ShortRead::FastqStreamer will read chunks in parallel depending on the value of ShortRead:::.set_omp_threads I see this discussed here: https://stat.ethz.ch/pipermail/bioc-devel/2013-May/004355.html and nowhere else. It probably should be documented in ShortRead. Possibly this has already changed for I am using still R 3.1.0. I thought I'd check. Oh, and, in my

Hello, I am very new in R so I am so sorry for this question. I have the Barro-Lee data set which contains 98 countries and I want to run the regressions only for the Latin America countries, so what do you recomend? How can I delete all the other countries or how can I select the countries of Lat. Am. thank you this is the list of countries SHCODE COUNTRY NAME WBCTRY

Dear R-Help, I would be most grateful if you could inspect the attached install file. I would like to be able to use ShortRead to generate QA reports for Genome Analyzer output data. OS: Linux CentOS 5.3 on HP Proliant server . In process of installing "R" package after configuration flagging some missing modules-libraries the install process will not perform 'make' function.

In pvec(list(1, 2), FUN, mc.cores=2) FUN sees integer() arguments whereas pvec(list(1, 2, 3), FUN, mc.cores=2) FUN sees list() arguments; the latter seems consistent with pvec's description. This came up in a complicated Bioconductor thread about generics and parallel evaluation https://stat.ethz.ch/pipermail/bioc-devel/2012-October/003745.html One relevant point is that a

http://bwa-surma.org/pndyv/jzvmnxmtdohwbfhplindsrf.mpbpyaydmvosnbmgs marcotasto at libero.it 1/25/2015 10:15:09 AM -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.digium.com/pipermail/asterisk-users/attachments/20150125/be3cb925/attachment.html>

I have an NT4 server as PDC for a domain: WG. Domain members (on 3 subnets) can either log into the domain, or at least access shares from the network neighboorhood if they don't want to log on. When I boot a samba server as a workgroup member (I don't log it into the domain) everything runs fine for about 24 hours; domain or WG members can access shares on any machine including the

Hello everyone. There is a new competition, outlined on the blog dataists<http://www.dataists.com/2010/10/using-data-tools-to-find-data-tools-the-yo-dawg-of-data-hacking/>, inviting us to analyse statistics of the use of R packages (collected from 52 R users), to create a R-package suggestion engine for ourselves. Since I noticed several bloggers already wrote about it (as I have detailed

Hello all, I upgraded my R workstation, and to my dismay, only one core appears to be used during intensive computation of a bioconductor function. What I have now is two dual-core Xeon 5160 CPUs and 10 GB RAM. When I fully load it, top reports about 25% user, 75% idle and 0.98 short-term load. The archives gave nothing helpful besides mention of snow. I thought of posting to HPC, but this system

I have a two part question Part 1) I am trying to remove characters in a string based on the position of a key character in another string.? I have a solution that works but it requires a for-loop.? A vectorized way of doing this has alluded me.? CleanRead<-function(x,y) { ? if (!is.character(x)) ??? x <- as.character(x) ? if (!is.character(y)) ??? y <- as.character(y) ?

Based on some testing it seems to me that if I have a package with a dataset in /data a Sweave vignette in inst/doc (but no associated pdf file) the vignette loads the data in /data through data(dataset) and I do a R CMD build R will try to build the pdf version of the vignette, but will be unable to find the dataset in data because the package is not yet installed. However, if I do

Which PCIe cards work with North American BRI & Asterisk? Digium & Sangoma don't support it, according to everything I've read (their manuals and their tech support). I think I need National, maybe National 1 or National 2. I already got an NT-1. I'm getting a few ISDN phones to test the circuit. I ordered a Dialogic Diva Diva 4BRI - 8 PCI-E 4 Ports Quad 803-031-02B Gu...