similar to: R crashing oddly

Hi, I have been using the function lme() of the package nlme to model grouped data that is auto-correlated in time and in space (the data was collected on different days via a moving monitor). I am aware that I can use the correlation classes corCAR1 and corExp (among other options) to model the temporal and spatial components of the auto-correlation. However, as far as I can tell, I can only

Hi, I have been looking for an R package which allowed to do meta-analysis (both pairwise and network/mixed-treatment) at arm-level rather than at trial-level, the latter being the common way in which meta-analysis is done. By arm-level meta-analysis I mean one that accounts for data provided at the level of the individual arms of each trial and that does not simply derive the difference between

Dear All, Suppose I want to write a method for the generic function confint(): > args(confint) function (object, parm, level = 0.95, ...) So, it looks like the second and third argument have been predefined in the generic function. Suppose one or several of the predefined arguments don't apply or fit (in some sense) with the design of the rest of the package. What should one do? I see

This is a question of clarification. IN 2009 Higgins, Thompson and Spiegelhalter (J R Statist Soc A 172:137-159) gave WinBUGs code to get credible intervals from random effects meta analysis for the prediction interval of a new study. It appears that the predict.rma function creates approximate credible intervals (pending a function revision by the author) for that purpose. Is my assumption

Hi All, I want to produce a similar "Forest Plot" as it is on the following link, but my data would be having only two columns (one for "Estimate" and other for "Std. Dev"). Can anyone suggest some function() {Package} which can take such file as an input and give following forest plot:

Hi everyone, I'm using the metafor package to meta-analyze a set of proportions. This is working really well for the raw proportions, but is there a way to back-transform the arcsine transformed proportions in the rma or forest functions with the atransf option? The estimates and CIs for the transformed proportions need to be back-transformed to be the sin of the estimate squared.

influence.measures gives several measures of influence for each observation (Cook's Distance, etc) and actually flags observations that it determines are influential by any of the measures. Looks good! But how does it discriminate between the influential and non- influential observations by each of the measures? Like does it do a Bonferroni-corrected t on the residuals identified by

Dear R-community, I'm currently trying to assemble a forest plot using the "forest" function from package "metaphor". Works well. Even the regular "main"-argument works for adding a title to the graph. However, I would like to add one top row which explains the nature of the columns. Very much like the usual header in spreadsheet programs. For example:

Dear R-help, I am interested in using structural equation modeling. Just getting started with it, but I'm looking for suggestions for packages. As an aside, what's the best way for looking for packages at CRAN? -- Robert Terwilliger Biomedical Physicist Laboratory of Neurocognitive Development Western Psychiatric Institute and Clinic University of Pittsburgh Medical Center Loeffler

Dear Wolfgang Viechtbauer and R users, I have few questions regarding the development of the package 'metafor. As you suggested , I post to the R-help mailing list. I read you're planning an extension of this method to the multivariate case. I think it would be a useful tool. I'm currently performing some analyses with R on multiple outcomes, using the Stata command mvmeta to get

I have a data set with 50 different x values and 5 values for the sampling variance; each of the 5 sampling variances corresponds to 10 particular x values. I am trying to fit a mixed effect linear model and I'm not sure about the syntax for specifying the fixed variance structure. In Pinheiro's book my situation appears to be similar to the example used for varIdent, where there is a

Hello: I am trying to understand the method 'hatvalues(...)', which returns something similar to the diagonals of the plain vanilla hat matrix [X(X'X)^(-1)X'], but not quite.  A Fortran programmer I am not, but tracing through the code it looks like perhaps some sort of correction based on the notion of 'leave-one-out' variance is being applied. Whatever the

Dear all, I'm currently applying a mixed model approach to meta analysis using the package metafor. I use the "model.matrix()" function to create dummy variables. The option btt gives me the combined test for the dummies. Problem is, I don't know which indices I have to use, and can't really figure it out from the help file and the examples. I use following code : X <-

Hello, I have written a simple Metropolis-Hastings MCMC algorithm for a binomial parameter: MHastings = function(n,p0,d){ theta = c() theta[1] = p0 t =1 while(t<=n){ phi = log(theta[t]/(1-theta[t])) phisim = phi + rnorm(1,0,d) thetasim = exp(phisim)/(1+exp(phisim)) r = (thetasim)^4*(1-thetasim)^8/(theta[t]^4*(1-theta[t])^8) if(runif(1,0,1)<r){ theta[t+1] = thetasim }

Dear R community, I'm using the ,metafor'-package by Wolfgang Viechtbauer (Version: 0.5-5) to calculate random-effects meta-analyses using Correlations and Sample Sizes as the raw data. (By the way: Really a nice piece of work, Wolfgang! Thanks heaps.) I specified the "rma.uni' function so that it looks like this: MAergebnis<-rma.uni(ri=PosOutc, ni=N,

Hi R-colleagues. In the sem-package i have a problem to introduce hidden variables. As a simple example I take an ordinary factor analysis. The program: cmat=c(0.14855886, 0.05774635, 0.08003300, 0.04900990, 0.05774635, 0.18042029, 0.11213013, 0.03752475, 0.08003300, 0.11213013, 0.24646337, 0.03609901, 0.04900990, 0.03752475, 0.03609901, 0.31702970)

In a classical meta analysis model y_i = X_i * beta_i + e_i, data {y_i} are assumed to be independent effect sizes. However, I'm encountering the following two scenarios: (1) Each source has multiple effect sizes, thus {y_i} are not fully independent with each other. (2) Each source has multiple effect sizes, each of the effect size from a source can be categorized as one of a factor levels

Hi, I am trying to place my own functions in the nlme environment: The following statement works: environment(coef.corSPT) <- environment(getS3method("coef","corSpatial")) but this one returns an error: environment(get("coef<-.corSPT")) <- environment(getS3method("coef<-","corSpatial")) Error in

Hi, I am trying to read in records from an old main frame file. Each record is 640 bytes. I had some success using the following statement: iconv(readChar(con, nchars=640, useBytes = TRUE),from="IBM037",to="",sub="#") What I have found, however, is that ocassionally a record will contain a Null halfway through, which causes readChar() not to read the rest of the

I was not sure who I should contact about this, so I am posting this here. There are a few broken links on the R website. 1) http://www.r-project.org/search.html -> link to the Nabble R Forum. I belive the correct/new URL should be: http://r.789695.n4.nabble.com/ 2) http://www.r-project.org/other-docs.html -> link to "Auswertung ?kologischer Daten". Not sure if there is a new