similar to: Saving tab/csv delimited data with NaN's

Hi, I'm a biologist, so please forgive me if my question sounds absurd! I have 3 parameters x1, x2, x3 and a response variable y.The sample size is 75. I tried to do the following: mylm<-lm(y~ x1 + x2 + x3, data="mydata") but i can only get stats from anova for the first 2 variables. The third comes up as NA. The degrees of freedom for the third variable are 0. Is there

Hi, I have a problem with a package I have developed in that functions do not get loaded due to older versions of the functions being in the .GlobalEnv? fetched from .Rdata files stored from previous saved workspaces. I need to be able to fix this somehow when I load the package. I do not want to mess up the search order to fix the problem. How I got myself into this mess is that I started

Hi, Suppose I have the following tabular data: 1729_at | TRADD | TNFRSF1A-associated via death domain | protein-coding 1773_at | FNTB | farnesyltransferase, CAAX box, beta | protein-coding 177_at | PLD1 | phospholipase D1, phosphatidylcholine-specific | protein-coding What is the right separator used for read.table function? I tried this: dat <-

Hello all, I should probably know this by now... Anyway: I have a large matrix (dim(data) is 3000 18000). In each element are one of the following character strings "0/0", "1/1", "1/2", "2/2". I wanted to replace "0/0" with NA and the other three with 0,1,2 respectively. To accomplish just the first of these four steps I did this:

Just now I again had occasion to want nested describe lists in a documentation file. I found that the bug which I reported on 18 October, 2001 still persists. I checked on the bug report at the R web page, and found that the notes say ``Not a problem in R 1.4.0 (2001-12-08)''. Well, it's still a problem for me --- using R 1.4.1. (Details: platform sparc-sun-solaris2.7 arch

Until recently, I naively believed that a csv was the same as a tab-delimited file except commas replaced tab characters (provided of course, the characters being separated weren't either). Evidently, that is not the case. I tried reading a tab-delimited file (created in Excel [2000, W2K] and ftp'd as ASCII to linux) into R platform i686-pc-linux-gnu arch i686 os

my csv file is very simple - just one line for purpose of this test: 0{TAB}0 and read function is this: csvdata = read.csv(file="d:/s/test.csv",head=FALSE,sep="\t") then error comes: Error in source("d:/test.csv") : d:/test.csv:1:9: unexpected numeric constant 1: 0 0 but when I change delimiter to ; (colon) then error not shows up anymore -- View this

R CMD check tells me * checking R code for possible problems ... NOTE agexact.fit.rds: ... may be used in an incorrect context: ?optim(init, agfitfn, ...)? Warning: <anonymous>: ... may be used in an incorrect context: ?optim(init, agfitfn, ...)? Can anyone tell me what this message means? My searches haven't turned up anything useful. This is with R 2.7 and 2.9. The message

Hello Friends I want to generate tab-delimited text file of my every users information in once. i have a button called EXPORT on my page when i clicked on this button than i want to generate tab-delimited text file for every users information. can anybody give any snippet of code or any idea for this Thanks -- Posted via http://www.ruby-forum.com/.

Dear all: I have a tab delimited file as following AGE WEIGHT PROTEIN ........ 6 20 3 ........ 8 39 4 ........ I tried to read it as following: data <- read.table(file,sep="\t",header=T); but there is only column for the data after reading in,: dim(data); [1] 200 1 the column name is "AGE...WEIGHT...........PROTEIN...." Any quick suggestion will be appreciated.

Having problems with the write.table function. I can write a tab delimited file just fine, but for each line in my matrix its inputs a carriage return when i dont want it to. For example my matrix might be: ID V1 V2 V3 FARY1004 1 2 3 FARY2067 2 3 1 FARY4587 2 2 2 And I want the written File to be: FARY1004 1 2 3FARY2067 2 3 1FARY4587 2 2 2 TIA -- View this

Hello everyone, I use Bob Muenchen's approach for reading in "in-stream" (to use SAS parlance) delimited data within a script. This works great: mystring <- "id,workshop,gender,q1,q2,q3,q4 1,1,f,1,1,5,1 2,2,f,2,1,4,1 3,1,f,2,2,4,3 4,2, ,3,1, ,3 5,1,m,4,5,2,4 6,2,m,5,4,5,5 7,1,m,5,3,4,4 8,2,m,4,5,5,5" mydata <- read.table( textConnection(mystring),

Dear all, I need to read in 4 sets of tab delimited data in a loop. The 4 data sets are called "simu1.dat", "simu2.dat" and so on. I know what I need on the righthand side of the read.table expression but I can't the left hand side of it to work (see the line in bold below). Can you kindly help? Many thanks. simu1 <- matrix(0,30,3) simu2 <- matrix(0,30,3) simu3

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Hello, I'm trying to integrate example data in the shape of a tab delimited ASCII file into my package and therefore dropped it into the data subdirectory. The build works out just fine, but when I attempt to install I get: ** building package indices ... Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 500 elements Calls: <Anonymous>

Hi, I want to do a chi square test and I have two tab delimited text files with Expected and Observed values to compare. Each file contains only the values and are 48 rows by 116 columns. I have managed to do something with them, but I don't think it is right as I got a p value of 1. In this case I used the read.table() function to read the values from the files. But I don't know if

Hello, I am trying to print out ANOVA summaries --- as returned by summary (aov(...))--- in tab-delimited format, either to a file or to the console, but so far I haven't been able to figure out a solution. My particular ANOVA has repeated measures, so it is an instance of class aovlist. Can anyone offer any suggestions? I am relatively new to R, so please forgive me if I am missing

Hello R users, Good day!! I was wondering if there is a way in R to read in a particular column from a tab-delimited file, edit it and write it back into the file with all other columns intact. When I say edit I mean just replacing all the values in that column. I know to read a particular column from a file using colClasses option in read.delim() function. Is there any such option to write out

Hello R wizards, What is the best way to read a data file containing both fixed-width and tab-delimited files? (More detail follows.) _*Details:*_ The U.S. Bureau of Labor Statistics provides local area unemployment statistics at ftp://ftp.bls.gov/pub/time.series/la/, and the data are documented in the file la.txt <ftp://ftp.bls.gov/pub/time.series/la/la.txt>. Each data file has five

Hi All, I have a very (very) large tab-delimited text file without headers. There are only 8 columns and millions of rows. I want to make numerous pieces of this file by sub-setting it for individual stations. Station is given as in the first column. I am trying to learn and use sqldf package for this but am stuck in a couple of places. To simulate my requirement, I have taken iris dataset as an