similar to: tiff() and antialias option

Hi, I was wondering if someone in the mailing list has any insight into this segfault error that I consistently find when running a script containing heatmap() in R 2.8.1 and 2.8.0 on a Linux 64-bit machine. Some points: 1. This occurs when running heatmap(). 2. Interestingly, if I source() the script or copy and paste the script in its entirety, this error occurs. However, if I run the

using X11(antialias="none") plot(1:10) produces an incomplete plot with 2.7.0. under MacOS 10.4.11: both y-axes are missing.the y-ticks (except the tick at `2' wich is missing) including labels are there. this happens with a 1280x854 labtop monitor. is this known behaviour/a cairo bug? joerg

Hello all, a friend has a problem with tiff() which I was unable to help about. I searched the error messages to no avail. When he tries: tiff(filename = "FedeWhyDoesntThisBloodyWork.tif", width = 5, height = 5, units = "cm", bg = "white", res = 1200) Error in tiff(filename = "FedeWhyDoesntThisBloodyWork.tif", width = 5, : unable to start device

Hi all, I'm currently preparing some figures that will be submitted to PloS One. In their guidelines they state that they will only accept figures in tiff or eps format, with the warning that eps figures will be converted to tiff format ( see http://www.plosone.org/static/figureGuidelines.action ). Because of this conversion, I figured I'd generate tiff-format figures from the beginning.

Hi all, I am trying to make tiff files of lattice plots at a resolution greater than 300 dpi required by a journal (PLoS ONE). I have tried both the tiff and bitmap functions. tiff keeps panel colors but reduces axes and tick labels so they are nearly invisible. bitmap maintains correct label size but only produces greyscale. Regular plots work fine with tiff; the problem is only with lattice

I love the new tiff(), jpeg(), and png() in R 2.7.0 but found an issue that I didn't see reported. When specifying 'units = "in"' but forgetting to change the default height and width (so the figure is unintentionally going to be 480 inches by 480 inches) I run into problems. Here's the reproducible example: tiff("a.tiff", units = "in", res = 1200,

We recently discovered that since R 3.3.0, on our CentOS 6 based cluster, R gets built without TIFF support. The last version where TIFF support was built, was 3.2.5. We have libtiff 3.9.4 installed: $ rpm -q libtiff-devel libtiff-devel-3.9.4-21.el6_8.x86_64 (Since CentOS 6 is so old, we have manually installed newer versions of some dependencies: curl 7.46.0, zlib 1.2.8, bzip2 1.0.6, xz 5.2.2

Hi, I have been having issues producing plots in JPEG format, using type = "cairo" to get better anti-aliasing. When trying to set the physical size with units = "cm" or units = "mm", the width is set correctly but the height is not - it looks like the height is simply treated as pixels regardless of the 'units' argument. Example: x = 1:10 y = 2 * x

I am trying to create a high resolution tiff. It is not working. I am on Windows XP 32-bit R 3.0.0 Code input: tiff(file="test.tiff",width=6.83,height=6.83,units="in", res=1200) Return Message: Error in tiff(file = "test.tiff", width = 6.83, height = 6.83, units = "in", : unable to start tiff() device In addition: Warning messages: 1: In tiff(file =

I would be grateful for a bit of help. I am on a 32bit build of Ubuntu LTS 12.04 running R version 2.15.2 (2012-10-26) -- "Trick or Treat" Platform: i686-pc-linux-gnu (32-bit) from within RStudio and from within a terminal (sudo R | install.packages("tiff") ) I have the following compile error: > install.packages("tiff") Installing package(s) into

Hi, we need a solution for running a tiff printer driver within wine which creates tiff files from a word document, for example. Only printing through cups and/or lpr to a postscript file is doing now as known, but this is much overhead for the application we want to run. There should be a way to run such a tiff printer driver in wine. Or is doing anyone writing wineps like tiff driver

Over the years I have noted a couple of people interested in an R package that will read tiff files. There were some valid arguments against (e.g. R is not an image editting suite, libtiff does not support all tiff files, etc.). True enough, when I want to work with family photos, I use Gimp. But in my research I use tiffs as data sets in the context of computational biology and molecular

Dear R experts, I am trying to save three plots using tiff graphics devices; however the following code only produces two files (Rplot002.tif and Rplot003.tif) showing figures 1 and 3. Here is a simplified ex code tiff(filename ="Rplot%03d.tif",width=24,height=20,units="cm",res=300, pointsize=10, compression = "lzw") plot(1) mtext("Fig

Dear Friends, I have been trying to save multiple 3x3 (mfrow=c(3,3) graphics inside a loop using tiff figure format (not using PDF or savePlot functions) with no success. Could you please help? Here is a simplified example code: dat=data.frame (ID=rep(1:10,each=10),IDV=rep(seq(1:10),times=10)) dat$DV <- with(dat, 50+15*IDV) dat=dat[order(dat$ID,dat$IDV),] for(i in 1:10){ dt1 =

Hi, We have recently been using the tiff package for reading tiff images into the Bioconductor Package EBImage. This has been extremely helpful in conjunction with other steps to eliminate dependencies on ImageMagick. However, it seems that 12-bit images are not supported. We were wondering if there are plans to extend the functionality of the readTIFF() function in the tiff package to

Hi all I posted a couple of days ago about how to end up with wmf files eventually in R for linux. The short answer was: you (probably) can't...and don't! The journal in question also accepts TIFF files, I am told (it's a physiology journal). So I adjust my question: What is the best way to get TIFF files out of R? It can't create them directly as far as I can tell.

Hello all. A Journal we are sending an article to is asking for the following: To ensure the best reproduction quality of your figures we would appreciate high resolution files. All figures should preferably be in TIFF or EPS format... and should have the following resolution: Graph: 800 - 1200 DPI Photo: 400 - 800 DPI Color (only CMYK): 300 - 400 DPI (DPI = dots per inch) Since I am sending

Hi all, I am trying to create images in R suitable for journal publication. I'd like to make an image that is 3.6" wide and 5.08" length, and 1200 dpi. When I create a tiff file that is 800 dpi and 4x4", it works (although doesn't look good). But when I create a tiff that is the size and dpi I want, it doesn't work. I get the following error: Error in tiff(filename =

Dear R-help I want to display an image file in a new plot frame. SVG is my preferred format, but I can also consider PNG, GIF, JPEG, TIFF, and PPM (from ImageMagick). By way of background (although not material to this posting), the image file is generated by a call to 'dot' (part of the 'Graphviz' suite) after the required .dot file has been produced using hand-crafted R code.

Hello R-Help, I want to be able to read in a raster image, plot it with grid.raster or rasterImage and save the image with one pixel per a pixel element from my array. Saved preferably in a common image format. The real goal of my question is to eventually read in images with text on them, manipulate them with my controlled functions, save them without changing the image dimensions, and perform