similar to: How can I associate a list of defined names with the dataframes to be downloaded

Hola, buenas tardes, Hace unos dias que intento cargar unos datos de microarrays del ncbi con versión de R 2.15.2 de 32 bits en windows xp. he utilizado el siguiente codigo: library(Biobase) library(GEOquery) library(limma) gset <- getGEO("GSE6536", GSEMatrix =TRUE) Al hacerlo me da este error: "Error in function (type, msg, asError = TRUE) : couldn't connect to

Dear R-ers, I am using getGEO to download expression data from the Gene Expression Omnibus. With default settings, when a file is downloaded and parsed, lots of dotted lines are printed in the terminal, like this: .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........

R-developers, I'm looking for some 'best practices', or perhaps an upstream solution (I have a deja vu about this, so sorry if it's already been asked). Problems occur when a file is encoded as latin1, but the user has a UTF-8 locale (or I guess more generally when the input locale does not match R's). Here are two examples from the Bioconductor help list:

Hi all, I am trying to install the package "GEOquery" in unix. I have downloaded the standard version of R and this package is not contained in the default. I know that I can select repositories under windows but I don't know how to do it in unix. Does anyone have any idea on this? Thank you in advance, Eleni [[alternative HTML version deleted]]

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So, I''m working on a search engine of sorts that restricts results to your local area. I can successfully return all entries within 15 miles of a particular point, and I can successfully return all entries that match a search query, but I''m having trouble combining the two together and doing pagination on them. Basically, for the range query, you do a SQL query that returns all

I recently updated R 2.10.1 Patched (2010-02-20 r51163) This morning I reinstalled biomaRt using biocLite. Now I can no more connect to biomaRt and even the following instruction is hanging for a while until the same error message pops up. > listMarts() Error in value[[3L]](cond) : Request to BioMart web service failed. Verify if you are still connected to the internet. Alternatively the

Hello, I am trying to download a SOFT matrix file for GSE series to extract raw intensity data. gse<- getGEO('GSExxxx', AnnotGPL=T) However, I am not able to use the function Table(gse), which returns the following error >>>Error in function (classes, fdef, mtable) : unable to find an inherited method for function "Table", for signature "GSE" If I

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

Hai,   I had some users today that couldnt login. Windows stopped at the “Welcome” screen.     Now, i checked the logs and i noticed a change in winbind. i noticed 2 logs files with increase a 1000% in size.  log.winbindd-idmap and log.wb-NTDOM     Before ( samba 4.4.5 ) log.winbindd-idmap [2016/09/30 11:32:37.040567,  0] ../source3/winbindd/winbindd.c:280(winbindd_sig_term_handler)

Hi, I have 'R' code in file. saved it as exmaple.r here is the code....... library("hopach") GSE <- read.table("gene_expression_data",sep="\t",header=TRUE,row.names=TRUE) gene.dist <- distancematrix(t(GSE),d="euclid") gene.hobj <- hopach(t(GSE), dmat=gene.dist, mss="med") labelstosil(gene.hobj$cluster$label,gene.dist) I dont

Hi I would like to learn how the R function "hclust" deals with ties. It is written in Fortran, so I cannot access the code. Thanks!! [[alternative HTML version deleted]]

On Wed, Dec 11, 2019 at 09:42:49PM +0100, Arnd Bergmann wrote: > Each driver calling scsi_ioctl() gets an equivalent compat_ioctl() > handler that implements the same commands by calling scsi_compat_ioctl(). > > The scsi_cmd_ioctl() and scsi_cmd_blk_ioctl() functions are compatible > at this point, so any driver that calls those can do so for both native > and compat mode, with

On Wed, Dec 11, 2019 at 09:42:49PM +0100, Arnd Bergmann wrote: > Each driver calling scsi_ioctl() gets an equivalent compat_ioctl() > handler that implements the same commands by calling scsi_compat_ioctl(). > > The scsi_cmd_ioctl() and scsi_cmd_blk_ioctl() functions are compatible > at this point, so any driver that calls those can do so for both native > and compat mode, with

Hi List, I am currently testing inter-forest trusts between a pair of AD domains. All DCs and member servers are using Sernet Samba 4.4.5. I have set up conditional forwarding in by Bind setup (I'm using BIND9_DLZ) and all machines can resolve each other. On the DCs, I can see users from the other side of the trust using wbinfo -u --domain=<other domain>. In addition if I set up ID

Rusty, I currently try to make my guest boot from an virtio root device without having an external kernel. Some of the tools that I tried expect HDIO_GETGEO to work. The most interesting value is likely the geo.start value to get the offset of a partition. This value is filled by block/ioctl.c if fops->getgeo is set. This patch also fills in some standard values for heads, sectors and

Rusty, I currently try to make my guest boot from an virtio root device without having an external kernel. Some of the tools that I tried expect HDIO_GETGEO to work. The most interesting value is likely the geo.start value to get the offset of a partition. This value is filled by block/ioctl.c if fops->getgeo is set. This patch also fills in some standard values for heads, sectors and

Hai, ? I have some strange things and i cant figure out whats going on. The problem is the my domain users and the extra Domain Admin ( Admin )? cant access my member server ( and shares ) ? ? When?i login with the DOMAIN\Administrator it all works fine, can access all shares not popups with authorisation requests. ? but as DOMAIN\Admin ( has the same rights as domain Administrator ), is added

hello, today the following problem occurred: [2019/10/08 09: 57: 23.568282, 1] ../../source3/librpc/crypto/gse.c:660(gse_get_server_auth_token) gss_accept_sec_context failed with [Miscellaneous failure (see text): Failed to find cifs/fs-share at dom.corp (kvno 109) in keytab MEMORY: cifs_srv_keytab (arcfour-hmac-md5)] in my smb.conf I have the lines: kerberos method = dedicated keytab

I just created a windows domain. it is essentially empty except for a couple of users and an group policy related to windows update. I then configured samba to connect using ads. net ads join took > 5 minutes - but worked fine net ads testjoin takes ~5 minutes - shows a good join wbinfo -u takes ~5 minutes and shows the users During the long wbinfo pause, the log show: "Starting