similar to: density estimates for fixed points

Good evening, I am Marta Colombo, student at Milan's Politecnico. Thank you very much for your kindness, this mailing list is really useful. I am using the function kde2d for two-dimensional kernel density estimation and I'd like to know something more about this kind of density estimator. In particular I'd like to know: what bandwidth is used ? Thank you in advance for your attention

Estimate region of highest probabilty density Dear R-community I have data consisting of x and y. To each pair (x,y) a z value (weight) is assigned. With kde2d I can estimate the densities on a regular grid and based on this make a contour plot (not considering the z-values). According to an earlier post in the list I adjusted the kde2d to kde2d.weighted (see code below) to estimate the

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Dear All, The function I wrote can run well with the small data, but with the large data, the function runs very very slowly. How can I correct it? Thank you very much. My function as below: a<-c(1:240) b<-c(1:240) l=function(a,b){ v=0 u=0 uv=0 v[1]=0 u[1]=0 uv[1]=0 for (i in 1:(length(s)-1)){ v[i]<-((gx[[i]][b,(gx[[i]][a,1]+1)])-(gx[[i]][a,gx[[i]][a,1]+1]))/(gx[[i]][a,gx[[i]][a,1]+1])

Hello! I am trying to do a smooth with the kde2d function, and I'm getting an error message about NAs. Does anyone have any suggestions? Does this function not do well with NAs in general? fit <- kde2d(X, Y, n=100,lims=c(range(X),range(Y))) Error in if (from == to || length.out < 2) by <- 1 : missing value where TRUE/FALSE needed Thanks in advance!! Jen [[alternative

Dear all, I have a big data frame: str(data1) 'data.frame': 18272 obs. of 11 variables: $ tag : int 100001 100002 100003 100005 100007 100008 100009 100011 100012 100014 ... $ sp : Factor w/ 18 levels "acassp","acocar",..: 13 5 7 14 14 18 3 11 13 10 ... $ gx : num 20 10 35 68 88 63 123 115 137 136 ... $ gy : num 30 25 24 1 10 40 45 25 23 45 ...

Hello I'm trying to calculate 2d confindence bounds into a scatterplot using the function "kde2d" (package MASS) and a contour plot. I found a similar post providing a solution - unfortunatly I do not realy understand which data I have to use to calculated the named "quantile": Post URL: http://tolstoy.newcastle.edu.au/R/help/03b/5384.html > (...) > >> Is

Dear friends, Now, when i use the argument return(x=x,y=y,prob=prob) , R displays the waring message: Warning message: The return value for multiple variables wasn't used in: return(x = x, y = gy, prob = prob) I used the methods of "help.search("return")" and "?return" to get some help, but didn't find info on it. Anybody knows how it should be used

Hello, I'd be very grateful for help with some ggplot2's stat_density2d issues. First issue is with data limits. xlim() and ylim() doesn't seem to work; instead, estimates (and plotting) seems to be constrained to range(x), range(y) no matter what i do. The documentation says i can pass in kde2d's parameters to ... but pussing kde2d's "lims" parameter achieves

Hello, I have written a function in order to analyse gaze paths. It works with the test data but when I try to apply the function to a data frame that stores "the real data" in columns I receive the error message that the " In if (pp > 1) { : condition has length > 1 only the first element will be used " I interpret this error message as saying that only the first

Hi all, I'm fairly new to R, so I'm still trying to feel out what is available to me. I would like to be able to plot joint density in a two dimensional plot where density is indicated by color or darkness gradients, like a 2d color coded topographic map. Ideally, the output would be something I could then plot other points or lines on. Currently, I'm calculating joint density with

Hello, This sounds like a problem to which many solutions should exist, but I did not manage to find one. Basically, given a list of datapoints, I'd like to keep those within the X% percentile highest density. That would be equivalent to retain only points within a given line of a contour plot. Thanks to anybody who could let me know which function I could use! Best, Emmanuel

Dear Mailing-List, I think this is a newbie question. However, i would like to integrate a loop in the function below. So that the script calculates for each variable within the dataframe df1 the connecting data in df2. Actually it takes only the first row. I hope that's clear. My goal is to apply the function for each data in df1. Many thanks in advance. An example is as follows: df1

Dear all, In an attempt to draw fill patterns in grid graphics, I have encountered a behavior of grobX that I cannot understand from the documentation. Consider this, library(grid) ## gTree g1 <- gTree(children=gList( rectGrob(0.5,0.5, width=unit(0.8,"npc"), height=unit(2,"cm")), circleGrob(r=0.3)), vp=viewport(0.5,0.5)) ##

Dear list, Following a recent enquiry, I've been playing with the idea of creating a colour gradient for a polygon, using the Grid package. The idea is to draw a number of stripes of different colours, using the grid.clip function. Below is my current attempt at this, library(grid) rotate.polygon <- function(g, angle=0){ # utility function, works fine matR <- matrix(c(cos(angle),

I am a physician examining an NHANES dataset available at the NCHS website: http://www.cdc.gov/nchs/about/major/nhanes/nhanes2005-2006/demo_d.xpt http://www.cdc.gov/nchs/about/major/nhanes/nhanes2005-2006/hdl_d.xpt http://www.cdc.gov/nchs/about/major/nhanes/nhanes2005-2006/tchol_d.xpt Thank you to the R authors and the foreign package authors in particular. Importing from the SAS export

Hi, I guess I have a naive question. I use kde2d function in a standard way to estimate kernel densities of x and y (x and y are vectors) and plot them using image(). f1=kde2d(x,y) image(f1) But what if I want to see kernel estimates of three variables, x, y and z (a vector) plotted together ? Something in which x<->y is plotted and colored according to the corresponding value of z ?

Dear wizaRds, I use the MASS::kde2d function to estimate density of the two first principal components. I do that to have a graphic visualisation of a "group structure" in my dataset. So far, no problem. But i would like to estimate that density using weights according to the COS?? values that tells me if my observation is well represented on the factorial plan 1-2. I would like to

Hi all, who is using RadRails with Eclipse to create RoR applications? jsn -- Posted via http://www.ruby-forum.com/.

Hallo, I was trying some code, but couldn't make one step of the code properly. Can anybody please help me? I have one matrix like this > values [,1] [,2] [,3] [,4] [,5] [1,] 0.7777778 0.36111111 0.22222222 0.1388889 0.0000000 [2,] 1.0000000 0.00000000 0.53846154 0.0000000 0.5384615 [3,] 0.5200000 0.48000000 0.64000000 0.0000000 0.8800000 [4,] 0.8928571