Displaying 6 results from an estimated 6 matches similar to: "Multiple CHOLMOD errors when attempting poisson glmm"
2010 Jul 01
0
Cholmod warning when fitting a poisson GLMM
Hi,
I am getting a warning message when I am fitting a generalized mixed model (mod_2) and I don't understand why because when I add just an interaction factor the model works perfectly (mod_1).
Does anyone know what it happpens ?
Thanks,
Aïda
> mod_1<-lmer(sur15~soeviv15_4plus+frviv15_4plus+frat_15death+dad_class_new+soeviv15_4plus:dad_class_new +frviv15_4plus:dad_class_new+
2007 Jun 22
1
Matrix library, CHOLMOD error: problem too large
I have a pretty large sparse matrix of integers:
> dim(tasa)
[1] 91650 37651
I need to add one to it in order to take logs, but I'm getting the
following error:
> tasa = log(tasa + 1)
CHOLMOD error: problem too large
Error in asMethod(object) : Cholmod error `problem too large'
I have 2 Gb of RAM, and the current workspace is barely 300mb.
Is there any workaround to this?
2007 Jun 22
1
Matrix library, CHOLMOD error: problem too large
I have a pretty large sparse matrix of integers:
> dim(tasa)
[1] 91650 37651
I need to add one to it in order to take logs, but I'm getting the
following error:
> tasa = log(tasa + 1)
CHOLMOD error: problem too large
Error in asMethod(object) : Cholmod error `problem too large'
I have 2 Gb of RAM, and the current workspace is barely 300mb.
Is there any workaround to this?
2008 Feb 14
1
Cholmod error `matrix not positive definite'
Dear R-users,
I'm new to R, so my apologies if this question doesn't make sense.
I've tried the following model in lmer, and it works perfectly:
model<-lmer(aphids~densroot+zone+(1|zone/site), family=quasipoisson)
But if I try the exact same model with a different variable, totmas, the model looks as follows:
model<-lmer(aphids~totmas+zone+(1|zone/site), family=quasipoisson)
2007 Apr 03
1
lmer, CHOLMOD warning: matrix not positive definite
Hi,
I am getting a warning message when I am fitting a generalized linear
mixed model (m1.2 below).
CHOLMOD warning: matrix not positive definite
Error in objective(.par, ...) : Cholmod error `matrix not positive
definite' at file:../Supernodal/t_cholmod_super_numeric.c, line 614
Any idea?
Thanks for your help,
Reza
> sessionInfo()
R version 2.4.1 (2006-12-18)
i386-pc-mingw32
2012 Feb 06
1
lmer with spatial and temporal random factors, not nested
Hi, I am new to this list.
I have a question regarding including both spatial and temporal random
factors in lmer. These two are not nested, and an example of model I
try to fit is
model1<-lmer(Richness~Y+Canopy+Veg_cm+Treatment+(1|Site/Block/Plot)+(1|Year),
family=poisson, REML=FALSE),
where
richness = integer
Y & Treatment = factor
Canopy & Veg_cm = numerical, continous