similar to: cox regression extract strata as numeric

I have a very general question about what the centering option in basehaz does to factors. (basehaz computes the baseline cumulative hazard for a coxph object using the Breslow estimator). Lets say I'm interested in a survival model with two (dichotomous) factors and a continuous covariate. Variable Possible Values Factor1 0 or 1 Factor2 0 or 1

I've never seen this, and have no idea how to reproduce it. For resloution you are going to have to give me a working example of the failure. Also, per the posting guide, what is your sessionInfo()? Terry Therneau On 08/09/2012 04:11 AM, r-help-request at r-project.org wrote: > I have a couple of questions with regards to fitting a coxph model to a data > set in R: > > I have a

I am unable to get the basehaz function to apply a proportional hazards model to a new data frame. I replicated my specific situation with the example for coxph in the help, where I changed the x value of the first record from 0 to 1. Is there something incorrect in the syntax that I am using? Thanks in advance! test1 <- list(time= c(4, 3,1,1,2,2,3), status=c(1,NA,1,0,1,1,0),

Hello , I am hoping for some advice regarding obtaining the values for the hazard function in a cox regression that I have undertaken. I have a model in the following form, analysed with the package survival (v. 2.34-1) and a log-log plot obtained using Design (v. 2.1-2). For two variables, the lines in the survival curves crossed. The statistician I been obtaining advice from (who does not

On 2015/8/4 3:44, Alexei Starovoitov wrote: [SNIP] >> I'll post 2 LLVM patches by replying this mail. Please have a look and >> help me >> send them to LLVM if you think my code is correct. > > [SNIP] > patch 2: > do we really need to hack clang? > Can you just define a function that aliases to intrinsic, > like we do for ld_abs/ld_ind ? > void

Hello, I have a couple of questions with regards to fitting a coxph model to a data set in R: I have a very large dataset and wanted to get the baseline hazard using the basehaz() function in the package : 'survival'. If I use all the covariates then the output from basehaz(fit), where fit is a model fit using coxph(), gives 507 unique values for the time and the corresponding cumulative

* Edgar Pettijohn <edgar at pettijohn-web.com>: > What distro settings? These files should remain unchanged: ~$ tree /etc/dovecot/ /etc/dovecot/ ??? conf.d ??? ??? 10-auth.conf ??? ??? 10-director.conf ??? ??? 10-logging.conf ??? ??? 10-mail.conf ??? ??? 10-master.conf ??? ??? 10-ssl.conf ??? ??? 10-tcpwrapper.conf ??? ??? 15-lda.conf ??? ??? 15-mailboxes.conf ??? ??? 20-imap.conf ???

Hi all, are there any non-commercial solutions (apart from solutions like Dell EMC, IBM and NetApp) around that allow to simultaneously access the same file system via NFSv4 and Samba exports in a (nearly) non-conflicting manner, especially w.r.t. to NFSv4/Windows ACL incompatibilities? Best Sebatian ____________________ Sebastian Kraus Team IT am Institut f?r Chemie Geb?ude C, Stra?e des 17.

Dear R-users, I am checking the proportional hazard assumption of a cox model for a given covariate, let say Z1, after adjusting for other relavent covariates in the model. To this end, I fitted cox model stratified on the discrete values of Z1 and try to get beslow estimator for the baseline cumulative hazard function (H(t)) in each stratum. As far as i know, if the proportionality assumption

Hello R-users. I believe that the way basehaz (in the survival package) compute the baseline hazard function is false. I come to question this function when it gives me hazard probabilities greater than 1. Looking at the code I think I've localised the error : hazard probability is computed as : H <- -log(surv) but it seems to me that hazard probabilities is rather an instantaneous

* Edgar Pettijohn <edgar at pettijohn-web.com>: > Is your goal to have "1" config file? No, that would eliminate the ability to change distro settings via the regular package management. My goal is to add/remove what my service requires via the additional local.conf. p at rick -- [*] sys4 AG https://sys4.de, +49 (89) 30 90 46 64 Schlei?heimer Stra?e 26/MG,80333 M?nchen

I want use survfit() and basehaz() inside a function, but it doesn't work. Could you take a look at this problem. Thanks for your help. Following is my codes: library(survival) n <- 50 # total sample size nclust <- 5 # number of clusters clusters <- rep(1:nclust,each=n/nclust) beta0 <- c(1,2) set.seed(13) #generate phmm data set Z <- cbind(Z1=sample(0:1,n,replace=TRUE),

Dear All, I'm having just a little terminology problem, relating the language used in the Hosmer and Lemeshow text on Applied Survival Analysis to that of the help that comes with the survival package. I am trying to back out the values for the baseline hazard, h_o(t_i), for each event time or observation time. Now survfit(fit)$surv gives me the value of the survival function, S(t_i|X_i,B),

Dear R-help, I am trying to obtain the baseline survival estimate of a fitted Cox model (S_0 (t)). I know that previous posts have said use 'basehaz' but this gives the baseline hazard function and not the baseline survival estimate. Is there a way to obtain the baseline survival estimate or do I have to use the formula which does something like S(t) = exp[- the integral from 0 to t of

FreeNAS / FreeBSD have native NFSv4 ACLs. They do however lack kernel oplock support so there are perhaps some caveats in that regard. On Thu, Jul 2, 2020 at 3:07 PM Strahil Nikolov via samba < samba at lists.samba.org> wrote: > Hi Kraus, > > I know that Gluster can be exported over NFS-Ganesha (supports v4.X), > Samba (protocol 1.0 in order to get 'real'

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* Edgar Pettijohn <edgar at pettijohn-web.com>: > > Only /etc/dovecot/local.conf should be changed. > > > So you want the standard files to remain unchanged from default settings and override them with your settings in local.conf? Exactly (he said that in his initial mail). -- [*] sys4 AG http://sys4.de, +49 (89) 30 90 46 64 Schlei?heimer Stra?e 26/MG, 80333 M?nchen

* Thore B?decker <me at foxxx0.de>: > You might need to quote that last argument, otherwise it can get > interpreted by the shell as globbing, which obviously is not what you > want. > > I've been using wildcard arguments enclosed within '' and "" for > various doveadm commands without issues so far. Right. I had thought so too (and forgot to mention

Hi, I am computing the Nelson-Aalen (NA) estimate of baseline cumulative hazard in two different ways using the "survival" package. I am expecting that they should be identical. However, they are not. Their difference is a monotonically increasing with time. This difference is probably not large to make any impact in the application, but is annoyingly non-trivial for me to just

Good morning, On Mon, 2023-02-27 at 02:06 +0000, Coolvibes Reloaded wrote: > rite i've got the icecast2 page setup but i don't have any active > mounts? > why's that once you got your server running it will list those sources that are connected. So if it is freshly started and there are no sources connected nothing is shown as there is nothing to show. The next step would