similar to: rJava downloads but cannot load, when I run R as root

On 10 October 2009 at 05:40, lmramba at gmail.com wrote: | > library(rJava) | Error in library(rJava) : there is no package called 'rJava' | > install.packages("rJava") | Warning in install.packages("rJava") : | argument 'lib' is missing: using '/usr/local/lib/R/site-library' | --- Please select a CRAN mirror for use in this session --- | Loading

> library(rJava) Error in library(rJava) : there is no package called 'rJava' > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Good afternoon, A strange one - library(rJava) works for root but not for user sean On 64-bit Ubuntu 9.10, using R as root (sudo -i), I can say library(rJava) and it works fine with no error message of any kind. But logged in as myself user "sean", it can't start... sean at SeansPC:~$ R --no-save --vanilla R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for

Hi Chris, > I think the problem may be options setting where R/rJava will look for Java so I tried: > > options(java.home="/usr/lib/jvm/java-8-openjdk-amd64/") This should not be necessary. I would recommend to start a fresh R session in order to unset this. > As far as I can see Debian is happy with the setup of java and javac: > ... > And I have the full jdk

Hi, I am unable to install the package rJava. I tried doing what the output suggests, but it doesn't help. How can I get R to find/recognize my Java installation? I am running R-2.15.0. waichler at snow> sudo R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_22 Java home path : /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre Java compiler : /usr/bin/javac Java

attempting to install rJava on R-2.7.0, x86_64 platform, config.log shows the following error: configure:3880: checking whether JNI programs can be compiled configure:3898: gcc -m64 -std=gnu99 -o conftest -g -O2 -I/path/to/x86-64-linux/jdk-1.6.0_06/jre/../include conftest.c -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64/server -L/path/to/x86-64-linux/jdk-1.6.0_06/jre/lib/amd64

Esteemed useRs and Devs, Attempts to update package:rJava to the latest version have failed. See my code and output below. Notably, as suggested here http://stackoverflow.com/questions/3311940/r-rjava-package-install-failing $ sudo apt-get install r-cran-rjava ran successfully without error or warning, but my rJava package is not updated, and remains un-updatable... Greatly appreciate any

Installing rJava fails consistently, whether installed via the command line as below, or through "install.packages( 'rJava' )", and whether 0.84 or 0.85 is used, with the message :- "checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to

Hi all, When I installed rJava from source, rJava installation was failed with below messges. $ R CMD INSTALL rJava_0.9-4.tar.gz ....... ....... ....... gmake[1]: Leaving directory `/tmp/RtmpNwiCae/R.INSTALL4ebb76a3400d/rJava/jri' installing via 'install.libs.R' to /stat/R-2.15.1/lib/R/library/rJava ** R ** inst ** preparing package for lazy loading ** help *** installing help

Hello list, I'm having some difficulty getting rJava to load in littler. Even after a R CMD javareconf and a reinstall of littler, I get this: jlaing at xenon:~$ r -e "require(rJava)" Loading required package: rJava Loading required package: methods Error : .onLoad failed in loadNamespace() for 'rJava', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable

Hi, I install rJava in linux. The installation, from source, is ok. But I have this error on load package. > library(rJava) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/usr/local/lib/R/site-library/rJava/libs/rJava.so': libjvm.so: cannot open shared object file: No such file or directory Error: .onLoad failed in

I remember JGR installation on SuSE 10.3 as a nightmare that eventually I overcame with JGR designers' help. I have installed SuSE 11.1, latest R version and am trying to install JGR again. It is still a nightmare. I have followed the guidelines on http://jgr.markushelbig.org/JGR_on_Linux.html I have made sure I have the so R libraries. I have installed java-1.6.0-sun and its development

Hi, I use Redhat Linux for R. Now I am trying to use the rJava library. I downloaded JRE beta 2 from Sun. I typed root@~]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0-beta2 Java home path : /usr/java/jre1.6.0 Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64::/usr/java/packages/lib/amd64:/lib:/usr/lib JNI linker

i'm having trouble using rJava on ubuntu 11.10 amd 64-bit. when i try to source my code that uses rJava, i get the following error: Error : .onLoad failed in loadNamespace() for 'rJava', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/usr/lib/R/site-library/rJava/libs/rJava.so': libjvm.so: cannot open shared object file: No

Hi folks: I'm trying to update my JGR and related packages, but run into a compile problem, that I suspect must be affecting others. I get this output when compiling rJava, JavaGD, etc.: ## checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '' java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server

Hi all I have problems installing rJava on my system. ######## My system: > R.version # at R prompt platform x86_64-pc-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 8.1 year 2008 month 12 day 22 svn rev 47281 language R version.string R version 2.8.1

Having difficulties getting rJava to install on my Debian Squeeze box. Perused the R-help list and tried some things that have worked for others but not for me. Below is the output of my attempted build, R CMD javareconf -e, and sessionInfo(). Note I tried the R CMD javareconf also as root, restarted R after each of these, all no help. * Installing *source* package ?rJava? ... checking for

Hi Ista! Thanks a lot for your support!! It puzzles me because it?s the first time that something like this happens to me. I?m aware that root and user don?t have the same environmental variables here. However, I don?t know why root chooses Java 9 and my user chooses Java 10. Isn?t Java 10 ready to be used as a root? It seems that we are going to have to wait until rJava releases a new

Hello, I just installed rJava on [root at UG13 ~]# R --version R version 2.9.0 (2009-04-17) runing on a [root at UG13 ~]# cat /etc/redhat-release CentOS release 5.3 (Final) This is the output of [root at UG13 ~]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.4.2_18 Java home path : /usr/java/j2sdk1.4.2_18/jre Java compiler : /usr/bin/javac Java headers gen.:

Hi All, Running R CMD javareconf -e (or R CMD javareconf as root I am rot on my machines) Fails. / [root at penguins1lanalt etc]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_30 Java home path : /usr/java/jre1.6.0_30 Java compiler : not present Java headers gen.: Java archive tool: Java library path: