Displaying 20 results from an estimated 9000 matches similar to: "Penalized Logistic Regression - Query"
2010 Aug 03
1
Penalized Gamma GLM
Hi,
I couldn't find a package to fit a penalized (lasso/ridge) Gamma regression
model. Does anybody know any?
Thanks in advance,
Lars.
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2011 May 01
1
Different results of coefficients by packages penalized and glmnet
Dear R users:
Recently, I learn to use penalized logistic regression. Two packages
(penalized and glmnet) have the function of lasso.
So I write these code. However, I got different results of coef. Can someone
kindly explain.
# lasso using penalized
library(penalized)
pena.fit2<-penalized(HRLNM,penalized=~CN+NoSus,lambda1=1,model="logistic",standardize=TRUE)
pena.fit2
2009 Sep 26
2
Design Package - Penalized Logistic Reg. - Query
Dear R experts,
The lrm function in the Design package can perform penalized (Ridge)
logistic regression. It is my understanding that the ridge solutions are not
equivalent under scaling of the inputs, so one normally standardizes the
inputs. Do you know if input standardization is done internally in lrm or I
would have to do it prior to applying this function.
Also, as I'm new in R (coming
2013 Jul 17
1
glmnet on Autopilot
Dear List,
I'm running simulations using the glmnet package. I need to use an
'automated' method for model selection at each iteration of the simulation.
The cv.glmnet function in the same package is handy for that purpose.
However, in my simulation I have p >> N, and in some cases the selected
model from cv.glmet is essentially shrinking all coefficients to zero. In
this case,
2005 Jan 19
1
recursive penalized regression
Hi,
Few days ago I posted a question to r-sig-finance, which I thought would
be an easy one. To my surprise I have received no replies, which makes
me think that it is either harder than I thought, or that it makes no
sense. I am reposting the message (with some modifications) on the
R-help in a hope to get some leads, suggestions for alternatives, etc.
My apologies to those who had seen this on
2009 Oct 14
1
different L2 regularization behavior between lrm, glmnet, and penalized?
The following R code using different packages gives the same results for a
simple logistic regression without regularization, but different results
with regularization. This may just be a matter of different scaling of the
regularization parameters, but if anyone familiar with these packages has
insight into why the results differ, I'd appreciate hearing about it. I'm
new to
2014 Jan 18
6
My first package
Hi All,
I'm planning to submit my first package to R, and although I read all the
documentation, I'm not very clear on the following 2 items, from which I'd
appreciate your guidance:
1)I understand it is suggested to use the R dev version to build the
package. Which one specifically should I use to build a package on a Mac
OS? How about package dependencies, which version should I
2003 Sep 14
3
Re: Logistic Regression
Christoph Lehman had problems with seperated data in two-class logistic regression.
One useful little trick is to penalize the logistic regression using a quadratic penalty on the coefficients.
I am sure there are functions in the R contributed libraries to do this; otherwise it is easy to achieve via IRLS
using ridge regressions. Then even though the data are separated, the penalized
2016 Apr 01
3
TensorFlow in R
Hi All,
I didn't have much success through my Google search in finding any active
R-related projects to create a wrapper around TensorFlow in R. Anyone know
if this is on the go?
Thanks,
Axel.
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2016 Apr 01
3
TensorFlow in R
Hi All,
I didn't have much success through my Google search in finding any active
R-related projects to create a wrapper around TensorFlow in R. Anyone know
if this is on the go?
Thanks,
Axel.
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2011 Feb 26
2
Reproducibility issue in gbm (32 vs 64 bit)
Dear List,
The gbm package on Win 7 produces different results for the
relative importance of input variables in R 32-bit relative to R 64-bit. Any
idea why? Any idea which one is correct?
Based on this example, it looks like the relative importance of 2 perfectly
correlated predictors is "diluted" by half in 32-bit, whereas in 64-bit, one
of these predictors gets all the importance
2013 Feb 10
3
Constrained Optimization in R (alabama)
Dear List,
I'm trying to solve this simple optimization problem in R. The parameters
are the exponents to the matrix mm. The constraints specify that each row
of the parameter matrix should sum to 1 and their product to 0. I don't
understand why the constraints are not satisfied at the solution. I must be
misinterpreting how to specify the constrains somehow.
library(alabama)
ff <-
2010 Feb 21
4
R on 64-Bit…
Dear R users,
I know this issue came up in the list several times. I’m currently running
R on 32-bit on Windows and due to memory limitation problems would like to
move to a 64-bit environment. I’m exploring my options and would appreciate
your expertise:
1) Windows 64-bit: Prof. Brian Ripley recently posted the experimental
built of R for win 64-bit. I’ll appreciate any feedback on
2017 Sep 21
3
Add wrapper to Shiny in R package
Dear List,
I'm trying to add a function that calls a Shiny App in my R package. The
issue is that within my function, I'm creating objects that I'd like to
pass to the app. For instance, from the example below, I'm getting
"Error: object
'xs' not found". How can I pass "xs" explicitly to shinyApp()?
*Under R directory:*
myApp <- function(x, ...) {
2005 Mar 03
1
total variation penalty
Hi,
I was recently plowing through the docs of the quantreg package by Roger
Koenker and came across the total variation penalty approach to
1-dimensional spline fitting. I googled around a bit and have found some
papers originated in the image processing community, but (apart from
Roger's papers) no paper that would discuss its statistical aspects.
I have a couple of questions in this
2010 Mar 14
7
R on Linux - a primer
Hi,
I'm looking to move from Windows into a 64-bit Linux environment. Which is
the best Linux Flavor to use within R? To install R on this environment, do
I need to do any compiling?
Thanks all!
Axel.
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2009 Oct 30
0
different L2 regularization behavior between lrm, glmnet, and penalized? (original question)
Dear Robert,
The differences have to do with diffent scaling defaults.
lrm by default standardizes the covariates to unit sd before applying
penalization. penalized by default does not do any standardization, but
if asked standardizes on unit second central moment. In your example:
x = c(-2, -2, -2, -2, -1, -1, -1, 2, 2, 2, 3, 3, 3, 3)
z = c(0, 0, 0, 1, 0, 0, 1, 0, 1, 1, 0, 1, 1, 1)
You
2005 Aug 13
1
Penalized likelihood-ratio chi-squared statistic: L.R. model for Goodness of fit?
Dear R list,
From the lrm() binary logistic model we derived the G2 value or the
likelihood-ratio chi-squared statistic given as L.R. model, in the output of
the lrm().
How can this value be penalized for non-linearity (we used splines in the
lrm function)?
lrm.iRVI <- lrm(arson ~ rcs(iRVI,5),
penalty=list(simple=10,nonlinear=100,nonlinear.interaction=4))
This didn’t work
2017 Sep 21
0
Add wrapper to Shiny in R package
Dear Axel,
I've used environment for such problems.
assign("xs", xs, envir = my.env) in the myApp function
get("xs", envir = my.env) in the server function
Best regards,
ir. Thierry Onkelinx
Statisticus/ Statiscian
Vlaamse Overheid / Government of Flanders
INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE
AND FOREST
Team Biometrie &
2010 Feb 16
1
penalized package for ridge regression
Dear all,
I am using "penalized" package for "Ridge" regression. I do
not know how can I get regression coefficients using that package . Please
help me.
Thanks
--
Linda Garcia
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