similar to: Use of R in Schools

The following citEntry includes a url with %3A and other encodings citEntry(entry="article", title = "Software for Computing and Annotating Genomic Ranges", author = personList( as.person("Michael Lawrence" )), year = 2013, journal = "{PLoS} Computational Biology", volume = "9", issue =

Can anyone suggest an equivalent, for lattice graphs, of the base graphics argument bty="l"? NB that I am leaving off the box around the strip, with a strip function: stripfun <- function(which.given,which.panel, factor.levels=as.expression(levlist), ...){ panel.text(x=0, y=0.5, lab = as.expression(levlist[which.panel[which.given]]),

Does anyone know any more than is in the following press release about REvolution Computing and their commercialization of R? http://www.intel.com/capital/news/releases/080122.htm "Intel Capital, the global investment arm of Intel Corporation, today announced that it has invested in the Series A financing of REvolution Computing, creator of parallel computing software for computational

In Section 1.4.2 of "Writing R Extensions" %\VignetteEngine{knitr::knitr} should be %\VignetteEngine{knitr::knit} > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) Is this sort of thing best reported here, or is a huge report in order? John Maindonald email: john.maindonald at anu.edu.au phone : +61 2 (6125)3473 fax

<<< Thus factor analysis is in essence a model for the correlation matrix of x, ? = ?'? + ? >>> This should surely be ? = ??' + ? Also line 3 under ?Details? says <<< for a p?element row-vector x, ? >>> x is here surely a column vector, albeit the transpose of a row vector from the data matrix. cf page 322 of ?Modern Applied Statistics with S?, 4th

expression() accepts multiple expressions as arguments, thus: plot(1:2, 1:2) legend("topleft", expression(y == a * x^b, "where "* paste(y=="wood; ", x=="dbh"))) Is there a way to do this when values are to be substituted for a and b? i.e., the first element of the legend argument to legend() becomes,

The following is 'semicolon.Rnw' > \SweaveOpts{engine=R, keep.source=TRUE} > > <<xycig-A, eval=f, echo=f>>= > library(SMIR); data(bronchit); library(KernSmooth) > @ % > > Code for panel A is > <<code-xycig-A, eval=f, echo=t>>= > <<xycig-A>> > @ % Sweave("semicolon") yields the following 'semicolon.tex'

rug() may add integer axis labels when called with a POSIXlt object as argument. dtimes <- c("09/29/2007 12:54", "09/30/2007 00:14", "10/01/2007 00:14", "10/02/2007 00:14", "10/03/2007 00:14", "10/04/2007 00:14", "10/05/2007 00:14", "10/06/2007 00:14", "10/07/2007

The inst/doc directory of the DAAG package has 6 files coral551.spot, ... that are around 0.85 MB each. It would be useful to be able to zip then, but that as matters stand interferes with the use of the Sweave file that uses them to demonstrate input of expression array data that is in the "spot" format. They do not automatically get unzipped when required. I have checked that

I have a file 4lmetc.Rnw, intended for inclusion in a LaTeX document, that starts: \SweaveOpts{engine=R, keep.source=TRUE} \SweaveOpts{eps=FALSE, prefix.string=snArt/4lmetc} The attempt to process the file through Sweave generates the error: > Sweave("4lmetc") Writing to file 4lmetc.tex Processing code chunks ... 1 : keep.source term verbatim Error in file(srcfile$filename, open =

I am doing [R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet?; Platform: x86_64-apple-darwin10.8.0 (64-bit)] > R CMD build DAAGviz > R CMD check DAAGviz_1.0.3.tar.gz Without a .Rinstignore file, I get: <<< The following files should probably not be installed: ?figs10.pdf?, ?figs11.pdf?, ?figs12.pdf?, ?figs13.pdf?, ?figs14.pdf?, ?figs5.pdf?, ?figs6.pdf?, ?figs9.pdf?

I get the same style of path as Hadley. This is on Windows 7 Home Premium with SP1. I start R by clicking on the R-2.31.0 icon. I'd assumed that it was a change that came with R-2.13.0! (On 32-bit Windows XP, which I have just checked, I do indeed get the 8.3 paths.) > R.home() [1] "C:/Programs/R/R-2.13.0" > sessionInfo() R version 2.13.0 (2011-04-13) Platform:

I am puzzled by the warning message in the output below. It appears whether or not I fit the seasonal term (but the precise point of doing this was to fit what is effectively a second seasonal term). Is there some deep reason why AR parameters ("Warning message: some AR parameters were fixed: ...") should somehow intrude into the fitting of a model that has only MA terms? >

help(letters, htmlhelp=TRUE) fails. Under the Mac OSX gui, the message is 'Help for the topic "a" was not found.' Under the version documented below, and under Windows, the message is "No documentation for 'a' in specified packages and libraries:" repeated for all the elements of letters, then followed by "you could try

You need to give the model formula that gave your output. There are two sources of variation (at least), within and between locations; though it looks as though your analysis may have tried to account for this (but if so, the terms are not laid out in a way that makes for ready interpretation. The design is such (two locations) that you do not have much of a check that effects are consistent over

The following code demonstrates an annoyance with plot.lm(): library(DAAGxtras) x11(width=3.75, height=4) nihills.lm <- lm(log(time) ~ log(dist) + log(climb), data = nihills) plot(nihills.lm, which=5) OR try the following xy <- data.frame(x=c(3,1:5), y=c(-2, 1:5)) plot(lm(y ~ x, data=xy), which=5) The "Cook's distance" text overplots the label for the point with the

I'd like to be able to modify axlab in (C) below so that 'Inf' is replaced by the infinity symbol. y <- rnorm(40) breaks <- c(-Inf, -1, 1, Inf) x <- cut(y, breaks=breaks) plot(unclass(x), y, xaxt="n", xlab="") ## A: The following gives the axis labels "(-Inf, 1]", etc. axis(1, at=1:3, labels=expression("(-Inf,-1]", "(-1,1]",

I am failing to get compactPDF to make any change to a pdf file that, a/c to the message from the CRAN upload site, can be very substantially compacted. Any ideas what may be wrong? I have also tried recreating the pdf file. I also tried R CMD build --resave-data --compact-vignettes DAAG The data files compact alright (but I get the 'significantly better compression' warning message

The following is evidence of what is surely an undesirable feature. The issue is the handling, in calls to model.frame(), of an explanatory variable that has been derived as an unclassed factor. (Ross Darnell drew this to my attention.) ## Data are slightly modified from p.191 of MASS > worms <- data.frame(sex=gl(2,6), Dose=factor(rep(2^(0:5),2)), +

I propose the following enhancements and changes to plot.lm(), the most important of which is the addition of a Residuals vs Leverage plot. (1) A residual versus leverage plot has been added, available by specifying which = 5, and not included as one of the default plots. Contours of Cook's distance are included, by default at values of 0.5 and 1.0. The labeled points, if any, are those