similar to: Escaping . in regular expression

dear all. Would someone be kind and willing to explain the code below for a person who has never used R? ( that is if one has enough time and inclination) It implements gillepsie's stochastic algorithm for Lotka Volterra model. What would help me tremendously is to see the breakdown of the line by line code into plain english. thanks for any insights or other comments. sean

On Sat, Jan 31, 2015 at 7:05 PM, Dirk Eddelbuettel <edd at debian.org> wrote: [...] > - either work in something like OpenMP and run in multiple threads that > remain /completely/ shielded from R, ie no R calls, and not even R data > types as you cannot trigger gc() calls from different threads > I think you can use R objects, as long as you don't call R functions on

Hi, I am using R in one of my courses. I am trying to use R's linprog package to solve to formulate 2-class classification problem as Linear programming problem. For my formulation, I need to set to "cvec" to all 0s. I know the points are linearly separable so an optimal solution "x" does exist, which satisfies all the constraints. But given the constraints and setting

I have cobbled together the following logic. It works but is very slow. I'm sure that there must be a better r-specific way to implement this kind of thing, but have been unable to find/understand one. Any help would be appreciated. hh.sub <- households[c("HOUSEID","HHFAMINC")] for (indx in 1:length(hh.sub$HOUSEID)) { if ((hh.sub$HHFAMINC[indx] == '01')

Hola! I am programming a class (S3) "symarray" for storing the results of functions symmetric in its k arguments. Intended use is for association indices for more than two variables, for instance coresistivity against antibiotics. There is one programming problem I haven't solved, making an inverse of the index function indx() --- se code below. It could for instance return the

I am working on a simulation where I need to count the number of matches for an arbitrary pattern in a large sequence of binomial factors. My current code is for(indx in 1:(length(bin.05)-3)) if ((bin.05[indx] == test.pattern[1]) && (bin.05[indx+1] == test.pattern[2]) && (bin.05[indx+2] == test.pattern[3])) return.values$count.match.pattern[1] =

Looking at shash in unique.c, from R-2.10.1 I'm wondering if it makes sense to hash the pointer itself rather than the string it points to? In other words could the SEXP pointer be cast to unsigned int and the usual scatter be called on that as if it were integer? shash would look like a slightly modified version of ihash like this : static int shash(SEXP x, int indx, HashData *d) {

Folks: In answer to a query, Andy Liaw recently submitted some code to construct a block diagonal matrix. For what seemed a fairly straightforward task, the code seemed a little "overweight" to me (that's an American stock analyst's term, btw), so I came up with a slightly cleaner version (with help from Andy): bdiag<-function(...){ mlist<-list(...) ## handle case in

Hi, It would be better if you provided the output of dput(dataset).? I am not sure about the structure of your dataset. Just from reading the data as is shown. dat1<- read.table(text=" separator,tissID >,>,2 ,2,1 ,6,5 ,11,13 >,>,4 ,4,9 ,6,2 ,7,3 ,21,1 ,23,58 ,25,9 ,26,4 >,>,11 ,1,12 >,>,21 ,4,1 ,11,3

Dear all, I am relatively new to R and have had some difficulty in understanding an error i get when running a code to solve a system of non-linear equations, with four equations and two variables. This is my code: ALPHA <- c(-0.0985168033402, 0.1, 0.15, 0.2, 0.25, 0.3, 0.35, 0.4) BETA <- c(-0.0985168033402, 0.1, 0.15, 0.2, 0.25, 0.3, 0.35, 0.4) GAMMA <- c(0.3940672148378, 0.1, 0.15,

Full_Name: Vilmos Prokaj Version: R 2.7.1 OS: windows Submission from: (NULL) (213.181.195.84) Dear developers, The following line of code (produced by a mistake) caused an infinite loop unique("a",c("a","b")) or also unique(1,1:2) I made a little investigation, and it seems to be that the following function from unique.c is looping infinitely static int

Hi, I have two columns that contain numbers along with letters (as shown below) and have different lengths. Each entry in the first column is likely to be found in the second column at most once. For each entry of the first column, if that entry is found in the second column, I would like to get the corresponding index. For instance, if the first entry of the first column is 5th entry in the

Hi, I wrote a package for linear programming and want to submit it to CRAN. Since the package 'quadprog' has a function with the name 'solve.QP' to perform Quadratic Programming, I named my (main) function 'solve.LP'. However 'R CMD check' gives one warning: * checking generic/method consistency ... WARNING solve: function(a, b, ...) solve.LP:

HI, May be this helps: set.seed(24) ?mat1<- matrix(sample(1:60,30*24,replace=TRUE),ncol=24) colnames(mat1)<- rep(c("O","H","L","C"),6) indx<-seq_along(colnames(mat1)) n<- length(unique(colnames(mat1))) ?res<- lapply(split(indx,(indx-1)%%n+1),function(i) mat1[,i]) lapply(res,head,2) #$`1` #????? O? O? O? O? O? O #[1,] 18 56 51 24 24 52 #[2,]

Hi, A system running ext3 crashed this afternoon (nothing to do with ext3, bad network driver). Is was saving a file from emacs when it happened. The file system is 0.06b and had ordered data as the mount option. Let me emphasize this was running ext3 pure, not with SnapFS or InterMezzo layered on top of it. strace reveals that Emacs does open("existing file name", O_TRUNC |

Santi, In the second line of your function you have the following: f <- numeric(length(x)) This sets the length of this numeric vector (i.e., "f") to the length of the vector "x". Later, inside the function you assign to values to 4 elements of the vector "f". This assumes that "f" is at least 4 element in length. However, you define

Dear R friends, I have a matrix with 2060 rows and 41 columns. One column is Date, another is Transect, and another is Segment. I want to ensure that there are 9 Transects (1 to 9) for each Date, and 8 Segments (1 to 8) for each Transect in the matrix, by inserting rows where these are missing. I am new to coding, but am trying to write a loop which checks if each of the transects already

Hello R-sig-debian and (hopefully) Dirk: On Debian wheezy, I have the R packaging that CRAN (you) provide. I run into a little trouble while trying to fiddle with alternative BLAS. I know you and I went around on this last year and I think perhaps I've found something wrong in the framework, or I've just done something wrong. I installed the packages openblas-base and openblas-dev, and

It's generally a very good idea to examine the structure of data after you have read it in. str(data2) would have shown you that read.csv() turned your strings into factors, and that's why the == operator no longer does what you think it does. use ... data_2 <- read.csv("excel_data.csv", stringsAsFactors = FALSE) ... to turn this off. Also, the %in% operator will achieve

> diff --git a/hw/virtio/virtio-pstore.c b/hw/virtio/virtio-pstore.c > new file mode 100644 > index 0000000..b8fb4be > --- /dev/null > +++ b/hw/virtio/virtio-pstore.c > @@ -0,0 +1,699 @@ > +/* > + * Virtio Pstore Device > + * > + * Copyright (C) 2016 LG Electronics > + * > + * Authors: > + * Namhyung Kim <namhyung at gmail.com> > + * > + * This