Displaying 20 results from an estimated 3000 matches similar to: "why summary() does not work here???"
2009 Jun 05
2
p-values from VGAM function vglm
Anyone know how to get p-values for the t-values from the coefficients
produced in vglm?
Attached is the code and output ? see comment added to output to show
where I need p-values
+ print(paste("********** Using VGAM function gamma2 **********"))
+ modl2<-
vglm(MidPoint~Count,gamma2,data=modl.subset,trace=TRUE,crit="c")
+ print(coef(modl2,matrix=TRUE))
2013 Apr 17
1
Bug in VGAM z value and coefficient ?
Dear,
When i multiply the y of a regression by 10, I would expect that the
coefficient would be multiply by 10 and the z value to stay constant. Here
some reproducible code to support the case.
*Ex 1*
library(mvtnorm)
library(VGAM)
set.seed(1)
x=rmvnorm(1000,sigma=matrix(c(1,0.75,0.75,1),2,2))
2012 Jan 10
1
S4 summary method not being called (VGAM)
The symptom triggering this email is that an S4 summary method sometimes refuses to be invoked, even when a package is explicitly loaded, if the first load of the package is implicit. It may or may not be specific to 'summary' methods and/or the 'VGAM' package. I've sent to R-devel because (i) it looks like some kind of bug to me, but I'm not sure; (ii) it's not
2008 Apr 18
2
rzinb (VGAM) and dnbinom in optim
Dear R-help gurus (and T.Yee, the VGAM maintainer) -
I've been banging my head against the keyboard for too long now, hopefully someone can pick up on the errors of my ways...
I am trying to use optim to fit a zero-inflated negative binomial distribution. No matter what I try I can't get optim to recognize my initial parameters. I think the problem is that dnbinom allows either
2007 Nov 16
1
constraint matrices in vglm (VGAM package)
Hello R users,
I am performing a multinomial logit regression and would like to
constrain a few model coefficients to be equal.
Here is my model:
multi <- vglm(case123con ~ SNP_A1+SNP_A2+age, multinomial, work.analy)
where case123con is a four level categorical variable (case 1, case 2,
case 3, control) and SNP_A1 and SNP_A2 are indicator functions (yes/no).
The output of this
2008 Apr 12
2
Predict Function
Hi all - my first time here and am having an issue with the Predict function.
I am using a tutorial as a guide, locate here:
http://www.ats.ucla.edu/STAT/R/dae/mlogit.htm
My code gives this error
> newdata1$predicted <- predict(mlogit,newdata=newdata1,type="response")
Error in `$<-.data.frame`(`*tmp*`, "predicted", value = c(0.332822934960197,
:
replacement has
2007 Oct 29
1
VGAM and vglm
Hi Folks,
I wonderif someone who is familiar with the details
of vglm in the VGAM package can assist me. I'm new
to using it, and there doesn;t seem much in the
documentation that's relevant to the question below.
Say I have a vector x of 0/1 responses and another
vector y of 0/1 responses, these in fact being a
bivariate set of 0/1 responses equivalent to
cbind(x,y).
E.g.
2007 Jan 06
2
Using VGAM's vglm function for ordinal logistic regression
R-Experts:
I am using the vglm function of the VGAM library to perform proportional
odds ordinal logistic regression. The issue that I would like help with
concerns the format in which the response variable must be provided for
this function to work correctly. Consider the following example:
------
library(VGAM)
library(MASS)
attach(pneumo)
pneumo # Inspect the format of the original dataset
2011 Feb 03
1
use "summary"
Hi, dear R users,
I'm running a Tobit regression and using "summary" to display model results.
It used to work. But this time, I kept getting this:
> summary(RES_TOBIT)
Length Class Mode
1 vglm S4
Could anyone tell me how to solve this problem, and why I got this problem?
Thanks.
Gary
[[alternative HTML version deleted]]
2010 Jul 05
1
Memory problem in multinomial logistic regression
Dear All
I am trying to fit a multinomial logistic regression to a data set with a size of 94279 by 14 entries. The data frame has one "sample" column which is the categorical variable, and the number of different categories is 9. The size of the data set (as a csv file) is less than 10 MB.
I tried to fit a multinomial logistic regression, either using vglm() from the VGAM package or
2011 Jun 22
2
VGAM constraints-related puzzle
Hello R users,
I have a puzzle with the VGAM package, on my first excursion into
generalized additive models, in that this very nice package seems to
want to do either more or less than what I want.
Precisely, I have a 4-component outcome, y, and am fitting multinomial
logistic regression with one predictor x. What I would like to find
out is, is there a single nonlinear function f(x) which acts
2010 Apr 09
2
How to enable core dump?
Dear all, I encountered a core dump like this,
(R:24072): Gdk-CRITICAL **: gdk_drawable_get_display: assertion
`GDK_IS_DRAWABLE (drawable)' failed
*** caught segfault ***
address 0x78, cause 'memory not mapped'
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 1
aborting ...
Segmentation
2009 Nov 04
1
vglm(), t values and p values
Hi All,
I'm fitting an proportional odds model using vglm() from VGAM.
My response variable is the severity of diseases, going from 0 to 5 (the
severity is actually an ordered factor).
The independent variables are: 1 genetic marker, time of medical observation,
age, sex. What I *need* is a p-value for the genetic marker. Because I have ~1.5
million markers I'd rather not faffing
2010 Jul 02
4
Visualization of coefficients
Dear all,
I try to show a subset of coefficients in my presentation. It seems
that a "standard" table is not a good way to go. I found figure 9
(page 9) in this file (
http://www.destatis.de/jetspeed/portal/cms/Sites/destatis/Internet/DE/Content/Wissenschaftsforum/Kolloquien/VisualisierungModellierung__Beitrag,property=file.pdf
) looks pretty good. I wonder if there is any function for
2010 Apr 30
3
replace elements in a list
Dear all, I have a list like this: l <- list(list(a=1,b=NULL), list(a=2,b=2))
I want to find out the elements with value of NULL and replace them with NA.
The actual case has a very long list, so manually find out and replace
them is not an option.
I can use for loop to do this, but I want to know if there is
vectorized way (or other ways) to do it?
Thanks
--
Wincent Rong-gui HUANG
Doctoral
2007 Jul 16
2
Error while fitting Partial Proportional Odds model using vglm
Dear R developers:
I am trying to fit a PPO model using vglm from the library VGAM, and get an
error while executing the code. Here is the data, code, and error:
Data: first row is the column names. a = age, and 1,2,3, 4 and 5 are
condition grades.
a 1 2 3 4 5
1 1 0 0 0 0
2 84 2 7 10 2
3 16 0 6 6 2
4 13 0 3 4 0
5 0 0 0 1 0
Library(VGAM)
2009 Sep 04
1
Multinomial and Ordinal Logistic Regression - Probability calculation
Dear all,
I am new to R and would like to run a multinomial logistic regression on my dataset (3 predictors for 1 dependent variables)
I have used the vglm function from the VGAM package and got some results. Using the predict() function, I obtained the probability table I was looking for. However, I would like to fully understand how the predict() function generates the probabilities or in
2009 Aug 10
5
Example scripts for R Manual
Hi,
I am wondering if some experienced users would help put the
ready-to-run code of the examples in the manuals. It would help new
users learn R faster by putting all the examples in an ready-to-run R
script file. Can somebody help do so sometime and post the code along
with the pdf manuals?
http://cran.r-project.org/manuals.html
Regards,
Peng
2012 Mar 14
1
Questing on fitting Baseline category Logit model
Dear all,
I am facing some problem with how to fit a "Baseline category Logit
model" with R. Basically I am considering famous "Alligator" data as
discussed by Agresti. This data can also be found here:
https://onlinecourses.science.psu.edu/stat504/node/174
(there is also an accompanying R file, however the underlying R code
could not load the data properly!!!)
Below are
2009 Jun 17
2
Urgent - odfWeave produces graphs /images with Read-Error
Dear list,
I have been working on a report with around 60 images in it, and
everything has been fine, until now. I find that the image output that
is produced by odfWeave produces images that are NOT readable by
OpenOffice or NeoOffice. I get empty boxes with Read-Error written in
them. While generating the file using odfWeave, I can see them being
generated on the screen, and they all seem fine.