similar to: Finding missing elements by comparing vectors

Hi, Is there a way in R to get the string which matches the expression, where the expression is a substring of the parent string. Lets say, I have $i <- "transcript:ENST0000112334 pid:ENSP000012345" What I need is the string "pid:ENSP000012345" from $i using the query "ENSP". Appreciate your comments. Praveen Surendran School of Medicine and

Hi, I have a vector with elements rs.id=c(''rs100'',''rs101'',''rs102'',''rs103'') And a dataframe ''snp.id'' 1 SNP_100 rs100 2 SNP_101 rs101 3 SNP_102 rs102 4 SNP_103 rs103 Task is to replace

Hi, I have a file in .sas7bdat format. I tried to open this file using read.sas7bdat() function. This gave me an error - "Error in read.sas7bdat("bnp_genetic.sas7bdat") : unknown host X64_7PRO". Could someone tell me what this error means? Thank you, Praveen. [[alternative HTML version deleted]]

Hi all, Is there a way to get the index of elements in intersect(x,y) where x and y are vectors with few common elements. Appreciate your response. Praveen Surendran. [[alternative HTML version deleted]]

Hi, Is there a command to get the indices of intersecting elements of two vectors as intersect() will give the elements and not its indices. Thanks in advance. Praveen Surendran School of Medicine and Medical Sciences University College Dublin Belfield, Dublin 4 Ireland. [[alternative HTML version deleted]]

Dear all, I am trying to read an SPSS file into a data frame in R using method read.spss(), sample <- read.spss(file.name,to.data.frame=TRUE) But dates in the data.frame ''sample'' are coming as integers and not in the actual date format given in the SPSS file. Appreciate if anyone can help me to solve this problem. Kind Regards, Praveen Surendran 2G, Complex

Hi, I have a vector "v" and would like to find the number of occurrence of element "x" in the same. Is there a way other than, sum(as.integer(v==x)) or length(which(x==v)) to do the this. I have a huge file to process and do this. Both the above described methods are pretty slow while dealing with a large vector. Please have your comments. Praveen

Hi! I am new to R just 3 days in it and i apologize if my questions seem very trivial and consumed your valuable time. I am coding in perl and i stumbled upon R regarding plotting good statistical graphs. I tried the kmean clustering for a large matrix ,say > 150 * 150 . I tried the example code given in the tutorial to perform 2d plot # i ranges from 2 to 10 cl <- kmeans(x, i, 20)

In my main R program, I have source("retaanalysis/Functions/doAirport.R") .... stuff to read data and calculate ads sapply(ads, function(x) {doAirport(x, base)} ) And doAirport has # analyze the flights for a given airport doAirport = function(df, base) { # Get rid of unused runway factor levels (from other airports) df$lrw <- drop.levels(df$lrw) # In gdata package #

-----Original Message----- From: Duncan Murdoch [mailto:murdoch at stats.uwo.ca] Sent: ned 2004-10-17 15:34 To: Gorjanc Gregor Cc: r-help at stat.math.ethz.ch Subject: Re: [R] Plotcorr: colour the ellipses to emphasize the differences On Sun, 17 Oct 2004 02:51:58 +0200, "Gorjanc Gregor" <Gregor.Gorjanc at bfro.uni-lj.si> wrote: [removed old stuff] >>I would also like to

Hi All, I'm trying to modify some of the default graphic parameters in a conditional histogram. While I was able to change the default grey background to white, I couldn't change the axis.font or the xlab font. I used the following code: /histogram(~V751|V013+V025, finalbase, xlab="Heard of HIV/AIDS (No/Yes)", col=c("cyan","magenta"),

Hi All, I'm trying trying to draw a colour wheel (a slice of hcl space) in R. Running the code below doesn't give me what I expect - there's some oddly bright colours of the wrong hue around c(0, 0) and I see three coloured circles (a small magenta, a medium sized yellow and a large cyan). Am I doing something wrong or is there a bug in the hcl code? (Also any suggestions for

My tuneR sawtooth wave function generator is broken. When I use the sine function, I get exactly what I expect: a sine wave whose frequency is defined by the freq parameter. In particular, higher frequencies have shorter wavelengths (more cycles per second means shorter waves). When I create a sawtooth wave, the opposite seems to occur: higher frequencies result in longer waves. But that?s not

Hello, I am having difficulty obtaining the correct colors in my R charts. > colors()[c(552, 254, 26)] [1] "red" "green" "blue" But, if I specify col=552 in my barplot, I get gray bars. Likewise, col=254 gives bright pink, and col=26 is a red-orange. I get accurate results when I spell out the names, but I am making a pallet with 20- 30 colors and it is a

Dear All, [I'd already sent this message earlier (Apr 6) but as I had no response and I still see that it is the case in R1.5 I thought I'd try again] I recently encountered a problem (actually missed some data) because "white" is one of colours in the "default" palette and that does not show up to well on my transparent (on white background). Of course it is

Dear Rlisters, When trying to indicate which data belong to which of 7 groups, the following plot shows only 5 groups: ss <- trellis.par.get("superpose.symbol") ss$col <- c("red","blue","green","yellow","orange","magenta","cyan") ss$pch <- format(1:7) ss$cex <- 1.2 ss <-

Hi, How do I anchor z=0 to the white color in a levelplot so that the color changes from cyan to magenta precisely as z changes from negative to positive? Also is it easy to change color scheme, say to blue/red as it's more dramatic? Is there a better function for showing heatmap with a color bar? Thanks in advance for any help, I've played with image, heatmap and levelplot a little and

Are there any R functions for creating palettes for three-way data? For example, election maps for three parties where pure red, blue, and green show 100% for the Red, Blue, and Green parties respectively, magenta shows a 50-50 Red-Blue split with 0 for the Greens, cyan a 50-50 Blue/Green split with no Red votes and so on, with grey, black or white at a 1/3,1/3,1/3 split vote. I've spent a

Hello R experts, I am trying to plot ordiellipse for my data but the col according to factors. Metabolites_raw= read.csv(file.choose(), head = TRUE) #file 21Metabolites.csv Metabolites_t=t(Metabolites_raw[,2:82]) ord <- metaMDS(Metabolites_t, distance="bray") symbol=as.numeric(Metab_metadata$LandType) col.list <-

Hi, Anybody can tell me why I don't have colors in my picture? library(lattice) my.pch<-c(17,16,15,18,20,9,10,12) my.fill<-c('yellow','black','green','red','blue','cyan','magenta','pink') wzorzec1<- c(1,3,2,4,6,4,2,3) wzorzec2<- c(5,3,6,6,2,3,4,1) a<-factor(wzorzec1) b<-factor(wzorzec2)