Displaying 20 results from an estimated 5000 matches similar to: "Matrix package,solve() errors and crashes Please help"
2009 Apr 20
1
Matrix package,solve() errors and crashes
Hello All,
I am working on graph object using IGRAPH package wanted to do Bonacich
Power. This is my graph object.
The file 'Graph.RData' (4.2 MB) is available for download at
http://dropbox.unl.edu/uploads/20090424/cfe4fcb854bb17f2/Graph.RData
Graph size
Vertices: 20984
Edges: 326033
Directed: FALSE
No graph attributes.
Vertex attributes: name.
No edge attributes.
When I use
2009 Apr 17
0
Matrix package,solve() errors and crashes"
Hello All,
I am working on graph object using IGRAPH package wanted to do Bonacich
Power. This is my graph object.
The file 'Graph.RData' (4.2 MB) is available for download at
http://dropbox.unl.edu/uploads/20090424/cfe4fcb854bb17f2/Graph.RData
Graph size
Vertices: 20984
Edges: 326033
Directed: FALSE
No graph attributes.
Vertex attributes: name.
No edge attributes.
When I use
2009 Apr 06
2
Bonpower Crashes Trying Sparse Matrix (Igraph)
Hello All,
I have been trying to do bonpow for a while now.Bonpow works for few graphs
and for few others it goes out of memory.
I did see reply to one of the posting Alph Centrality Crashed in Igraph
memory error.
The solution in the posting was to use sparse matrix. This is the link of
the message.
http://lists.gnu.org/archive/html/igraph-help/2008-04/msg00071.html
I was able to obtain
2009 Jun 28
1
ERROR: system is computationally singular: reciprocal condition number = 4.90109e-18
Hi All,
This is my R-version information:---
> version
_
platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status
major 2
minor 7.1
year 2008
month 06
day 23
svn rev 45970
language R
version.string R version 2.7.1 (2008-06-23)
While calculating partial
2004 Jan 14
2
Generalized least squares using "gnls" function
Hi:
I have data from an assay in the form of two vectors, one is response
and the other is a predictor. When I attempt to fit a 5 parameter
logistic model with "nls", I get converged parameter estimates. I also
get the same answers with "gnls" without specifying the "weights"
argument.
However, when I attempt to use the "gnls" function and try to
2011 Jan 22
1
faster mvrnorm alternative
Hello,
does anybody know another faster function for random multivariate normal
variable simulation? I'm using mvrnorm, but as profiling shows, my algorithm
spends approximately 50 % in executing mvrnorm function.
Maybe some of you knows much faster function for multivariate normal
simulation?
I would be very gratefull for advices.
--
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2010 Nov 10
2
prcomp function
Hello,
I have a short question about the prcomp function. First I cite the
associated help page (help(prcomp)):
"Value:
...
SDEV the standard deviations of the principal components (i.e., the square
roots of the eigenvalues of the covariance/correlation matrix, though the
calculation is actually done with the singular values of the data matrix).
ROTATION the matrix of variable loadings
2010 Oct 13
1
bwplot change whiskers position to percentile 5 and P95
Dear R-community,
Using bwplot, how can I put the whiskers at percentile 5 and percentile 95,
in place of the default position coef=1.5??
Using panel=panel.bwstrip, whiskerpos=0.05, from the package agsemisc gives
satisfaction, but changes the appearance of my boxplot and works with an old
version of R, what I don’t want, and I didn’t find the option in
box.umbrella parameters
Many thanks
2009 Jun 25
2
Error: system is computationally singular: reciprocal condition number
I get this error while computing partial correlation.
*Error in solve.default(Szz) :
system is computationally singular: reciprocal condition number =
4.90109e-18*
Why is it?Can anyone give me some idea ,how do i get rid it it?
This is the function i use for calculating partial correlation.
pcor.mat <- function(x,y,z,method="p",na.rm=T){
x <- c(x)
y <- c(y)
2008 Jul 05
5
help about random generation of a Normal distribution of several variables
Hello.
Somebody knows how can I generate a set of n random vectors of a
normal distribution of several variables?
For example, I want to generate n=100 random vectors of two dimensions
for a normal with mean c(0,1) and variance matrix:
matrix(c(2,1,1,3),2,2).
Thanks in advance,
Arnau.
2013 Jul 16
2
Problem following an R bug fix to integrate()
I have been told by the CRAN administrators that the following code generated
an error on 64-bit Fedora Linux (gcc, clang) and on Solaris machines (sparc,
x86), but runs well on all other systems):
> fn <- function(x, y) ifelse(x^2 + y^2 <= 1, 1 - x^2 - y^2, 0)
> tol <- 1.5e-8
> fy <- function(x) integrate(function(y) fn(x, y), 0, 1,
2010 Dec 15
5
Solution to differential equation
Hello,
I am trying to find the analytical solution to this differential equation
dR/dt = k1*(R^k2)*(1-(R/Rmax)); R(0) = Ro
k1 and k2 are parameters that need to fitted, while Ro and Rmax are the
baseline and max value (which can be fitted or fixed). The response (R)
increases
initially at an exponential rate governed by the rate constants k1 and k2.
Response has a S-shaped curve as a function
2017 Jan 24
3
Convertir programa Matlab a R sacado de Threshold Models of Collective Behavior de Michèle Lai & Yann Poltera
Estimados Usuarios-R:
Estoy convirtiendo un programa en Matlab a R.
El original lo saqu de:
Lai, M., & Poltera, Y. (2009). Lecture with computer exercises: Modelling and simulating social systems with matlab. Tech. rep., Swiss Federal Institute of Technology (December 2009). 27.
Ahora estoy convirtiendo la siguiente funcin:
function sizes = gridsizes(N,varargin)
% gridsizes(N) calculates
2006 Oct 12
0
Privates example? (fwd)
Resending this as the message size limit for the list is 100 KB,
and uncompressed, the attached plugin code is 150 KB.
---------- Forwarded message ----------
Date: Thu, 12 Oct 2006 23:47:25 +0300 (EEST)
From: Tuukka Hastrup <Tuukka.Hastrup@iki.fi>
To: Mike Dransfield <mike@blueroot.co.uk>
Cc: compiz@lists.freedesktop.org
Subject: Re: [compiz] Privates example?
On Thu, 12 Oct 2006,
2007 Apr 17
1
no visible binding for global variable
Hello everyone
I am trying to get one of my packages through R's QC.
The package is clean for me under R-2.4.1, R-2.5.0, and
R-devel, but Kurt gets
>
> * checking R code for possible problems ... WARNING
> hypercube: no visible binding for global variable ?f?
Function hypercube() [cut-&-pasted below] is intended to
return an adjacency matrix for an n-dimensional
2012 Sep 25
1
how to pass a function to a function inside a function
Hi,
I'm trying to compile two functions into one function. the first funtion is
called 'fs' which is self-made function, another function is from the
built-in 'integration' function that is copy-paste-edited. If built
separatey, these functions work well. However that is not the case if
combines together, where certainly I made mistake somewhere when
constructing the code.
2010 Jan 31
3
combining data frames in a list - how do I add breaks?
I'm a week-old R user, and have become stuck trying to create usable CSV
outputs for post-processing. I am using the package Rioja, which provides
small datasets of results. I am running several analyses in a loop and
iteratively adding the results to a *list* ("combined"). Within each
iteration I use the following:
> combined[[i]] <- performance(fit)
With two iterations I
2009 Mar 19
1
.Internal
I was trying to find source for optimize and I ran across
function (f, interval, ..., lower = min(interval), upper = max(interval),
maximum = FALSE, tol = .Machine$double.eps^0.25)
{
if (maximum) {
val <- .Internal(fmin(function(arg) -f(arg, ...), lower,
upper, tol))
list(maximum = val, objective = f(val, ...))
}
else {
val <-
2019 Mar 05
3
Development version of R fails tests and is not installed
G'day all,
I have daily scripts running to install the patched version of the
current R version and the development version of R on my linux box
(Ubuntu 18.04.2 LTS).
The last development version that was successfully compiled and
installed was "R Under development (unstable) (2019-02-25 r76159)" on
26 February. Since then the script always fails as a regression test
seems to
2000 Mar 14
1
qr.solve (fwd)
Two friend reported me a problem, which I can't solve:
(I run R-1.0.0, Debian Linux)
They hava a function "corr.matrix" (see end of mail), and when they
create a 173x173 matrix with this function
V <- corr.matrix(0.3, n=173)
V1 <- qr.solve(V)
reports:
Error in qr(a, tol = tol) : NA/NaN/Inf in foreign function call (arg 1)
For n < 173, qr.solve returns the correct