similar to: Looking for a quick way to combine rows in a matrix

What am I missing here? Both of my column headers in the 'FREQ' table are found in the 'genotype'; however, they aren't being recognized. > colnames(FREQ) [1] "X17362526" "X17362627" > colnames(genotype) [1] "X17362311" "X17362316" "X17362346" "X17362420" "X17362421" "X17362422"

How can I delete both rows and columns that do not meet a particular cut off value. Example: > d <- rbind(c(0, 1, 6, 4), + c(2, 5, 7, 5), + c(3, 6, 1, 6), + c(4, 4, 4, 4)) > f <- as.matrix(d) > f [,1] [,2] [,3] [,4] [1,] 0 1 6 4 [2,] 2 5 7 5 [3,] 3 6 1 6 [4,] 4 4 4 4 I would like to delete all

I would like to explore dendrogam plots interactively. For example, click on a node and return information about all of the children of that node. Is there a high level wrapper for locator() or click() that will return the nearest dendrogram node on a plot? If not, is there a way to obtain the [x,y] coordinates of all the nodes on a plot? Thanks, David David J. States, M.D., Ph.D. Professor

I'm creating an ANOVA model. Is there a way to pull in consecutive columns of variables for the test? Example: aov1<-aov(y~x1+x2+REG[,2:num], data=REG) I'm not looking for interaction effects, I just want to create a model for the first few columns of variables (exact number and names will vary) and a few other predetermined variables (in the example I named them x1 and x2). Thanks

Dear R-Help, I am trying to compute a new variable, let's call it "target cannon orientation (tco)" based conditionally on old variables, "TargetColor," "CannonOriB," and "CannonOriR." For every case in the data set, if TargetColor is "B" then I want tco to equal the value for that case of CannonOirB, else CannonOriR. I've tried writing

Somehow, I've managed to have my .Rdata files become `disassociated' from the R program. I am running Windows XP Pro. I have re-installed R 2.4 in an attempt to have it re-associate itself with .Rdata files, but to no avail. .Rdata files are now associated with a file compression program or alternatively with Rgui.exe. .Rdata files are represented by the blue R, but double-clicking on

Dear R-list, I apologize for my many emails but I think I know how to desctribe my problem differently and more clearly. My question is how to compare linear models with intercept and those without intercept using maximizing adjusted R^2 strategy. Now I do it like the following: > library(leaps) > n=20 > x=matrix(rnorm(n*3),ncol=3) > b=c(1,2,0) > intercept=1 >

Has anyone developed a function to generate a forest plot, the one used a lot in meta-analysis? Joseph F. Lucke, PhD Biostatistician Center for Clinical Research and Evidence-based Medicine Department of Pediatrics School of Medicine University of Texas Health Science Center at Houston Voice: 713-500-5651 Email: Joseph.F.Lucke@uth.tmc.edu Postal Mail: PO Box 20708, Houston, TX 77225-0708

Hi all, I'm pretty new to CentOS. I am working with a newly set-up server: [cbearden at host ~]$ lsb_release -a LSB Version: :core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.3 (Final) Release: 6.3 Codename: Final I'm trying to solve this problem (X11 forwarding)

Hallo, I just made a boxplot with the following command: boxplot(vsnrg$M~col(vsnrg$M)) When I now look at the plot. On the x-axis I just find numbers 1-6 because I have 6 datasets plotted. Now I want to add there the corresponding names which can be found in colnames(qrg). How can I realize this the online help does not help me. Thanks Corinna

I know my subject line seems odd, but I want to replace an expression—such as a variable—with its value. For example, I want to paste() some strings together, assign the result to a variable s, then use the value of s as a variable to hold another value. Something like this: import_subjects <- function (start, iterations) { for (i in 1:iterations) { # iterate from start to end s <-

Hi Nguyen, > Subject: [R] install "multtest" and "preprocessCore" packages in > Bioconductor library > Date: Wed, 30 Nov 2011 09:57:36 -0800 > From: UyenThao Nguyen <unguyen at tethysbio.com> > To: r-help <r-help at r-project.org> > CC: uth.nguyen at ucdavis.edu <uth.nguyen at ucdavis.edu> > > Hi All, > > I've tried to

The normality of the residuals is important in the inference procedures for the classical linear regression model, and normality is very important in correlation analysis (second moment)... Washington S. Silva > Thank you all for your replies.... they have been more useful... well > in my case I have chosen to do some parametric tests (more precisely > correlation and linear regressions

Greetings all. I've been having great difficulty getting Dovecot working. I'm getting stuck with using mbox directories outside of /home. Dovecot keeps giving me this message: imap(ncrosby): Namespace '': stat(/var/logmail/mbox/ncrosby) failed: Permis sion denied (euid=1001(ncrosby) egid=1001(ncrosby) missing +w perm: /var/lo gmail/mbox/ncrosby

Dear R experts, I'm new to R. It seems to be a simple question but I just can't find a way to do it. Please help me. I have two data sets x and y as shown in the following. I want to compare the first two columns in x and y, find the matched ones and assign the relative value from column 2 of y to generate the third column of x. Any help wil be appreciated. Thanks. > x [,1]

I have a text processing problem I'm hoping someone can help me solve. This issue it this. I have a character string in which I need to delete a variable number of characters from the string. The string itself contains the number of characters to be deleted. The number of characters to be deleted is proceeded by either a "+" or a "-". A toy example: Suppose I have

I'm new to R - and trying to create a plot similiar to the spider plot at http://www.statgraphics.com/eda.htm#radar . I can't figure out several things... most of which I would think would be straightforward.... How can I change the lines for each series plotted instead of creating a filled area? How can I get the labels for each of the radial axes at the outside of the plot

I have pulled a recent (today''s) clone of staging/xen-unstable.hg and I get a failure when trying to create a domain with xend/xm. The failure I get is: Error: (''<domain GUID>'', ''VM_metrics'') I have traced the problem down to where the pci = [ ''02:00.0'' ] parameter (which is the value in my case) from my configuration

This adds a boolean boot parameter to xen to allow reserved memory regions to be added to the iommu mappings for dom0. The parameter is "iommu_include_reserved" and is off by default. A warning is also traced when incorrect RMRR to system memory map values are detected. This is being added to address some incorrect BIOS''s that do not report correctly the requied reserved memory

dear friends - I have an ordered factor, ID, in a data.frame, labs, and make a table, aa <- with(labs,table(val >150,ID)) - and now the order in the table is according to the alphabetic order in ID, and not as I want it. I have tried adding [order(unique(labs$ID)] but it doesn't help. I have R 2.7.1 on WinXP. Best wishes Troels -- Troels Ring - - Department of nephrology - -