similar to: R errors when trying to read a file

Colleagues I have just encountered an interesting problem with readLines in R 2.7.0 in Windows Vista. I am trying to read a line that is created in the following manner: 1. Intel Fortran (ifort) 10.1 creates two text files. 2. The OS concatenates these files with: copy FILE1 +FILE2 FILE3 From R, I execute: readLines("FILE3") Only the first portion of the file (the original

Colleagues R 2.10.1 on a Mac I read in textfiles using readLines, then I process those files, then I use R to execute another program. Occasionally those files contain characters other than letter / numbers / routine punctuation marks. For example, a bullet (option-8 on a Mac) triggers the problem. Although R can read and process those characters, the other program cannot so I would like to

Colleagues, Using R2.7.0 in OS X, I am having trouble understanding the command textConnection. My situation is as follows: 1. I am trying to read a lengthy file (45000 lines) that has headers ~ every 1000 lines. read.table (or its variants) fail because of the recurrent headers. 2. My present approach is the following: a. use readLines to read the file, save as an array b. use grep

Colleagues, I am using R 2.7.2 on all three platforms (OS X; Windows; Linux) and I have encountered the following problem: I use R to issue a system call the execute a command in the OS. For example: system("DOSOMETHING TOSOMEFILE") In most situations, this task completes successfully and control returns to R. However, in rare situations, the target file (TOSOMEFILE) is

R version: 2.13.1 OS X Colleagues, I am working with a CSV file; for testing purposes, I created an XLS version of the file. When I read these files using read.xls (gdata) or read.csv, I encounter an error: Error in type.convert(data[[i]], as.is = as.is[i], dec = dec, na.strings = character(0L)) : invalid multibyte string at '<b0>C' The error occurs whether or not I invoke

Colleagues, [R 2.11; OS X] I am processing a file on the fly that contains the following text: XXX?? [email clients may display this differently -- the string is three X's followed by two instances of the letter a with an acute accent] I read the file with: X <- readLines(FILENAME) In this instance, the text of interest is on line 213. When I examine line 213, it reads: XXX\xe1\xe1

Colleagues, I am using R to assemble RTF documents (which are plain text). I need to embed a JPEG graphic that was created with R. I presume that the steps need to be: a. read the file into R b. convert the object to HEX format c. write the converted object to a textfile. If I read the file into R using readLines, I get the following (only the first 5 lines shown): > >

Colleagues, Hopefully a simple problem: I want to delete a column with a known name from a dataframe. I could write: FRAME <- FRAME[, names(FRAME) != NAMETODELETE] or FRAME <- FRAME[, !names(FRAME) %in% c(NAME1, NAME2, ETC)] Is there some simpler means to accomplish this? Dennis Dennis Fisher MD P < (The "P Less Than" Company) Phone: 1-866-PLessThan (1-866-753-7784)

Colleagues, I want to create the following array: "A1", "A2", "A3", "B1", "B2", "B3", "C1", "C2", "C3" I recall that there is a trick using "c" or "paste" permitting me to form all combinations of c("A", "B", "C") and 1:3. But, I can't recall the

Colleagues, I am interesting in opening a PDF document via the command line from both Windows, OS X, and Linux ( R version 2.8.0). I found a command openPDF in Biobase. However, I would rather execute the command myself. For example, in OS X: > system("open filename.pdf") is successful. Is there a comparable command line command for Windows or Linux? Dennis Dennis Fisher

Colleagues, I have some text: TEXT <- c("a", "bb;ccc", "dddd;eeeee;ffffff") I want to retrieve the portion of each element before the first semicolon. I can split each element using strsplit: SPLIT <- strsplit(TEXT, ";") This yields: > SPLIT [[1]] [1] "a" [[2]] [1] "bb" "ccc" [[3]] [1] "dddd"

Colleagues, I have created a list in the following manner: TEST <- list(c("A1", "A2"), c("B1", "B2"), c("C1", "C2")) I now want to delete one element from the list, e.g., the third. The command TEST[[3]] yields (as expected): [1] "C1" "C2" The command TEST[[-3]] yields: Error:

R 2.15.1 OS X Colleagues, I am reading a 1 GB file into R using read.table. The file consists of 100 tables, each of which is headed by two lines of characters. The first of these lines is: TABLE NO. 1 The second is a list of column headers. For example: TABLE NO. 1 COL1 COL2 COL3 COL4 COL5 COL6 COL7 COL8 COL9 COL10

I run R 2.1.1 in a Linux environment (RedHat 9) although my question is not platform-specific. Consider the following: > A <- c("Prefix-aaa", "Prefix-bbb", "Prefix-ccc") > B <- strsplit(A, "-") > B [[1]] [1] "Prefix" "aaa" [[2]] [1] "Prefix" "bbb" [[3]] [1] "Prefix" "ccc" How

Colleagues After reading in some clinical data, I discovered that the subject ID column contains entries only for the first record for each individual; subsequent rows are recorded as NA. For example: > 1 > NA > NA > NA > NA > 2 > NA > NA > NA > NA > 3 > NA > NA > ... I can think of various approaches to replace the NA values with appropriate

Colleagues: I have encountered the following situation: SERIES OF COMMANDS source("File1") MORE COMMANDS source("File2") Optimally, I would like File1 and File2 to be merged into a single file (FileMerged). However, if I wrote the following: SERIES OF COMMANDS source("FileMerged") MORE COMMANDS I encounter an error: the File2 portion of FileMerged

R version 2.13.1 OS X (or Windows) Colleagues, I received a number of files with a .xls extension. These files open in XL and, by all appearances, are XL files. However, it appears to me that the files are actually XML: > readLines(dir()[16])[1:10] [1] "<?xml version=\"1.0\"?>" [2] "<Workbook

Colleagues R 2.8.0; OS X, Vista, Ubuntu Linux In some instances, when I create a graphic using plot(XVAR, YVAR), it would be valuable to know the values that R will display on the y-axis (e.g., if the range of data is 0-70, it might display 0, 10, 30, 50, 70). Is there a simple means to access these values? Also, in some instances, additional ticks appear between the displayed values

Colleagues, Please forgive my ignorance of this topic. I am experienced with the installation/use of R in OSX and Windows, much less so with Linux. I just created a virtual machine of Ubuntu 9.0.4. Using the Synaptic Package Manager, I installed R 2.8.1. I would like to obtain 2.9.x and I am having trouble doing so using the tools available within Ubuntu. I tried apt-get install

I have data in the following format: > DATE [1] "01/13/2004" In order to find the difference between two data points, I presently use brute force to calculate the day of the year: > strptime(DATE, format="%m/%d/%Y")$yday [1] 12 Although this works, it may not be robust over different years. I assume that R is sufficiently clever that a much simpler approach