Displaying 20 results from an estimated 200 matches similar to: "Spatstat"
2018 Jan 24
4
Geometry delaunayn and deldir results, differing results from Octave due to decimal precision?
The problem:
I would like to translate the Octave algorithm in griddata.m to R.
Within the griddata algorithm calls are made to the Delaunay function. For the R translation I have found delaunayn within the "geometry" package and also the deldir package.
Both do similar things but give slightly different results depending on the input.
The question is, what is making the results for the
2018 Jan 24
0
Geometry delaunayn and deldir results, differing results from Octave due to decimal precision?
"The question is, what is making the results for the R packages different
from each other?"
There are literally thousands of R packages, contributed independently by
thousands of people. There should be no expectation of consistency or for
that matter, "correctness", among them. Caveat emptor.
Only within the base R distribution, maintained and mostly written by the R
Core
2006 Apr 06
1
rounding of voronoi vertices using deldir()
Hello list,
I'm just getting started with using R - I have been trying over the past
day or so to work out a method for generating voronoi polygons for
PostGIS using SQL. I was able to put together a procedure which works
relatively well, but is somewhat inefficient. Someone on the PostGIS
list pointed me to the deldir() function in R, for which I can export a
text file with x/y coordinates
2025 May 31
1
constructing a matrix for rgl plots
On 2025-05-31 7:04 a.m., ravi via R-help wrote:
> Hi,
> rgl plots seem to require the z object in the form of a matrix. I would like some help in constructing this matrix when I cannot use the outer function. Let me explain.
> library(rgl)
> library(plot3D)
> x <- 1:10
> y <- 1:20
> fun1 <- function (x,y) {x^2+y^2}
> z <- outer(x,y, fun1)
> open3d()
>
2012 Jul 18
1
convert deldir$delsgs to a X3D IndexedTriangleSet
Anyone knows how to convert a deldir$delsgs to a X3D IndexedTriangleSet?
Are there already any functions/packages?
[[alternative HTML version deleted]]
2025 May 31
1
constructing a matrix for rgl plots
I'll mention that the 'akima' package is also handy for this kind of
interpolation.
On 5/31/25 11:18, Duncan Murdoch wrote:
> On 2025-05-31 7:04 a.m., ravi via R-help wrote:
>> Hi,
>> rgl plots seem to require the z object in the form of a matrix. I
>> would like some help in constructing this matrix when I cannot use the
>> outer function. Let me
2024 Mar 16
1
Problem when trying to install packages
Though Navigator may mess up any Rtools stuff because it handles the
directory trees where packages and dependencies are located, does it not?
If so, maybe just reinstall RStudio directly from its website to proceed.
Just a guess obviously.
Bert
On Sat, Mar 16, 2024, 05:09 javad bayat <j.bayat194 at gmail.com> wrote:
> Dear Rui;
> Many thanks for your reply. I have installed Rtools
2024 Mar 16
1
Problem when trying to install packages
Dear all;
I found a useful video on youtube that has explained how to install Rtools.
I followed the instructions and the problem was solved.
" Installing R version 4.0 + RTools 4.0 + RStudio For Data Science (#R
#RTools #RStudio #DataScience) - YouTube
<https://www.youtube.com/watch?v=h2IPWVXaUuU> "
Sincerely
On Sat, Mar 16, 2024 at 10:15?AM Bert Gunter <bgunter.4567 at
2012 May 09
1
Paquete Spatstat
Hola a toda la comunidad R, el siguiente problema tengo para hacer
funcionar el paquete Spatstat.
Tengo instalado R version 2.15.0, y Ubuntu 12.04 los cuales ya lo
actualice. El paquete (spatstat) esta instalado pero puntualmente es
problema es asi:
/
> library("spatstat")
Loading required package: mgcv
Error : .onLoad failed in loadNamespace() for ''Matrix'',
2024 Mar 16
3
Problem when trying to install packages
Dear Rui;
Many thanks for your reply. I have installed Rtools (rtools43-5958-5975) on
my PC and I have R version 4.3.3 and 4.3.2 to install. Also I have
installed Rstudio through Anaconda Navigator.
But I do not know how to use Rtools for installing the R packages. I would
be more than happy if you help me.
Sincerely yours
> Dear Rui;
> I hope this email finds you well. I have a problem
2013 Feb 26
3
Adding markers and text for some data points after drawing a plot
Hi All,
I have a data set of around 17,000 gene names and their lengths. E.g.
gene kblength
A3GALT2 14.333
AADACL3 12.609
AADACL4 22.532
ABCA4 128.312
ABCB10 42.114
ABCD3 100.287
............
.........
and I was able to draw a reverse cumulative frequency plot using the following code:
d <-
2007 Nov 27
1
voronoi/Delaunay/Dirichlet tessellation on sphere in R or S?
There's Renka's STRIPACK, and TRIPACK, respectively, ACM TOMS Algorithms
772 and 751, and there's the R package "deldir" which does the Delaunay
for a plane, but does anyone have or know of the tessellation in R for a
sphere?
Also, is there a standard indexing scheme for Delaunay facets, and
perhaps of edges in such facets? I'd expect that to be a publication
reference,
2017 Aug 19
0
My very first loop!! I failed. May I have some start-up aid?
Thank you for providing the example code... for the request of running it
multiple times it would have helped if you could have confirmed that the
example ran through without errors... there were a lot of mistakes in it.
Look into using the reprex package to check your example next time.
I don't do this kind of analysis... I really don't know what to expect
from the functions. The
2011 Feb 24
1
weighted Voronoi diagrams
Dear R-users,
Does anyone know how to do weighted Voronoi diagrams (Dirichlet
tesselation) in R? To be more specific, I have a set of coordinates for
tree locations on a plot, and I'm looking for a way to do the
tesselation so that the polygon size for each tree depends on the size
of the subject tree, and the size of its neighbors. So, the location of
the bisection between two trees
2018 Jan 25
0
Geometry delaunayn and deldir results, differing results from Octave due to decimal precision?
I just looked at the data at the URL you posted and it looks like it
consists
of all the points in a rectangular grid. When you triangulate a rectangle
it is
arbitrary whether you use the SW-NE or the SE-NW diagonal and that looks
like the only difference between the various algorithms.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Thu, Jan 25, 2018 at 5:14 AM, Yuen, Kam <k.yuen at
2006 Aug 14
1
lasso for variable selection
For "importance" it's probably best to stick with absolute values of
coefficients, instead of value of the penalty parameter for which the
coefficients changed to non-zero.
Friedman skipped a lot of details on his rule ensemble in that talk, due to
time constraint. In his implementation he was using his own algorithm,
PathSeeker, for which paper and software are available on his
2011 Nov 03
2
Problem with R CMD check and the inconsolata font business.
I have just installed R version 2.14.0 and tried to re-build and
re-check some
of the packages that I maintain.
I'm getting a warning (in the process of running R CMD check on my "deldir"
package):
> * checking PDF version of manual ... WARNING
> LaTeX errors when creating PDF version.
> This typically indicates Rd problems.
> LaTeX errors found:
> ! Font
2006 Jul 19
2
voronoi tessellations
Okay, been working with tripack, seems the most mature package for this. Got it to work well with their test data set - data(tritest). When i tried random numbers to explore further, i am getting some results that don't reconcile.
example run this:
library(tripack)
y <- runif(100)
x <- runif(100)
vm <- voronoi.mosaic(x,y)
plot(vm)
par(new=T)
plot(x,y,col='blue')
when
2013 Jan 17
2
error installing KEGGSOAP
Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong?
many thanks
John
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
> biocLite("KEGGSOAP")
BioC_mirror:
2012 Sep 24
0
Deldir() Thiessen Polygons Problem
Good evening to all.
I find myself trying to create some Thiessen Polygons, in order to finish a
meteorology research.
This is the script I found to create the Polygons:
*
*
*voronoipolygons <- function(x) {*
* require(deldir)*
* if (.hasSlot(x, 'coords')) {*
* crds <- x@coords *
* } else crds <- x*
* z <- deldir(crds[,1], crds[,2])*
* w <- tile.list(z)*
* polys