similar to: I need your help about plsr

Hi, I need your help, so I send letter to you. I have a problem about plsr in pls package. I want to show how classfied or related each ohter samples, so I tried to use plsr and biplot. But, I failed. Because, I had to change data type of my sample. Unfortunately, I didn't know how change data type. I want you to help me about that. please, help me. I show you my

Hi. I was used to draw 2D plot to show distribution of my samples. It was very powerful in small samples. Recently , I handle a lot of type of samples as more 15. so, I want to use more dimention. I was used that I conduct plsda function and draw biplot, such as, p1=plsda(mw, sp) biplot(p1) How can I draw 3D graph with my data?? I don't know exactly numerical value each spot. please,

Hi~ helpers. I was surprised by R data type. I use to data type like table. I don't know R allow several data type such as list, number, matrix in the same matrix. I want to use plsr in pls package to anlaysis data. So, I read R help and example of plsr. that example show me that data as yarn has three colname as NIR, density and train. the NIR was 268(No. of col) X 71(No. of row)

Hi, Newbie question about the pls package. Setup: Mac OS 10.3.9 R: Aqua GUI 1.01, v 2.0.1 I want to get R^2 and Q^2 (LOO and Leave-10-Out) values for each component for my model. I was running into a few problems so I played with the example a little and the results do not match up with the comments in the help pages. $ library(pls) $ data(NIR) $ testing.plsNOCV <- plsr(y ~ X, 6, data =

Hi I am attempting to use plsr which is part of the pls package in r. I amconducting analysis on datasets to identify which proteins/peptides are responsible for the variance between sample groups (Biomarker Spoting) in a multivariate fashion. I have a dataset in R called "FullDataListTrans". as you can see below the structure of the data is 40 different rows representing a

Hi I am analysing a dataset of 40 samples each with 90,000 intensity measures for various peptides. I am trying to identify the Biomarkers (i.e. most significant peptides). I beleive that PLS with jack knifing, or alternativeley CMV(cross-model-validation) are multivariateThe 40 samples belong to four different groups. I have managed to conduct the plsr using the commands: BHPLS1 <-

Hi, this is my R-Script library(pls) file <- "C:\\TXT\\brix.txt" d <- as.matrix(read.table(file, header=T, sep=",", row.names = NULL)) plsdata <- data.frame(NIR=c(1:nrow(X))) plsdata$NIR <- I(d[,3:603]) plsdata$Brix <- d[,2] results <- plsr(Brix ~ NIR, data=plsdata) after the last string i have this error > results <- plsr(Brix ~ NIR, data=plsdata)

hi R help group, I have installed PLS package in R and use it for princomp & prcomp commands for calculating PCA using its example file(USArrests example). But How I can use PLS for Partial least square, R square, mvrCv one more think how i can import external file in R. When I use plsr, R2, RMSEP it show error could not find function plsr, RMSEP etc. How I can calculate PLS, R2, RMSEP, PCR,

All, I am working with NIR spectral data and it was great to find that the example in ?plsr also used spectral data. Unfortunately, I am having difficulty figuring out how the "yarn" dataset is structured to allow for the plsr model to read: library(pls) data(yard) yarn.oscorespls <- mvr(density ~ NIR, 6, data = yarn, validation = "CV", method = "oscorespls")

Hello, I have a data set with 15 variables (first one is the response) and 1200 observations. Now I use pls package to do the plsr as below. trainSet = as.data.frame(scale(trainSet, center = T, scale = T)) trainSet.plsr = mvr(formula, ncomp = 14, data = trainSet, method = "kernelpls", model = TRUE, x = TRUE, y = TRUE) from the model, I wish to know the

I am having a similar problem understanding the data structure of the "yarn" dataset described in the "[R] data structure for plsr" posts. I have spectroscopic data I'd like to run through a PLSR and have read the tutorial series, but still do not understand the data format required for the code to process my data. My current data structure consists of a .csv file read into

Dear readers, can anyone give an example how to use cross-validation in the plsr package. I miss to find the number of factors proposed by cross-validation as optimum. Thank you Peter -- View this message in context: http://n4.nabble.com/cross-validation-in-plsr-package-tp1563815p1563815.html Sent from the R help mailing list archive at Nabble.com.

Dear List, I am realtively inexperienced so i apologise in advance and ask for understanding in the simplicity of my question: I have data on the amount of grass per km in a cell ( of which i have lots) "grass" and for each cell i have x/y coordinates - required due to spatial autocorrelation Cells can be classfied in a hierarchical nature into AREAS and STATES i.e Cell 1, Cell 2,

Greetings, I have been exploring the use of the caret package to conduct some plsda modeling. Previously, I have come across methods that result in a R2 and Q2 for the model. Using the 'iris' data set, I wanted to see if I could accomplish this with the caret package. I use the following code: library(caret) data(iris) #needed to convert to numeric in order to do regression #I

I'm new in both R and statistics. I "did my homework", I tried the archives and whatever I managed to get from the sources, but still I need assistance with the plsr package. I have a model with 2 core determinants D1 and D2, made by 3 indicators each (D1a,D1b,D1c and so on). Also I have 2 moderating variables (m1,m2), where m1 moderates D1 and m2 modarates D2. The dependent

Hi, I have experimental response (Y) and many (important or not) actions (X). I want to create model: Y = aX1 + bX2 + ... + eX5 (1) from few most important actions of course. As I understand I have to use plsr for this task. I learned read.table and plsr R functions and how to plot some results from them, but still do not understand how I can get (or construct) function I need (function 1)?

Hi When I call for the loadings of my plsr using the command, x <- loadings(BHPLS1) my loadings contain variable names rather than numbers. >str(x) loadings [1:94727, 1:10] -0.00113 -0.03001 -0.00059 -0.00734 -0.02969 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:94727] "PCIList1" "PCIList2" "PCIList3" "PCIList4" ... ..$ : chr

Dear developeRs, I maintain a package 'pls', which has a main fit function mvr(), and functions plsr() and pcr() which are meant to take the same arguments as mvr() and do exactly the same, but have different default values for the 'method' argument. The three functions are all exported from the name space. In the 'pre namespace' era, I took inspiration from lm() and

> On Jul 13, 2017, at 10:43 AM, Bert Gunter <bgunter.4567 at gmail.com> wrote: > > poly(NIR, degree = 2) will work if NIR is a matrix, not a data.frame. > The degree argument apparently *must* be explicitly named if NIR is > not a numeric vector. AFAICS, this is unclear or unstated in ?poly. I still get the same error with: library(pld) data(gasoline) gasTrain <-

I have been working with the pls procedure and have problems getting the procedure to work with matrix or frame data. I suspect the problem lies in my understanding of frames, but can't find anything in the documentation that will help. Here is what I have done: I read in an 10000 x 8 table of data, and assign the first four columns to matrix A and the second four to matrix B pls <-