similar to: I updated/reinstalled ggplot2 and the trouble started...

Hi Tena, I recommend rapache for building websites with R. See http://biostat.mc.vanderbilt.edu/rapache/ -Ista > ---------- Forwarded message ---------- > From: "Tena Sakai" <tsakai at gallo.ucsf.edu> > To: <ted.harding at manchester.ac.uk>, <r-help at r-project.org> > Date: Tue, 28 Apr 2009 15:04:53 -0700 > Subject: Re: [R] Newbie R question PART2 >

Hi, I installed R 2.9.0 a couple of days ago on a linux machine. At the root of installation, I see 4 directories: bin, lib64, share, and src. I don't see libR.so anywhere. (In the following context, . (dot) indicates the root of my insta- llation.) I do see: ./lib64/R/lib/libRblas.so ./lib64/R/lib/libRlapack.so I became aware of such as I was preparing for an installation of little r.

Hi, I cannot compile R with shared library. I am using Redhad Linux on Dell hardware. Here''s what I am doing: I set ?PICFLAGS in config.site file: CPICFLAGS=-fPIC FPICFLAGS=-fPIC and issue: ./configure --enable-R-shlib --prefix=$HOME/newR make configure finishes with no complaints, the last informative line being: Options enabled: shared R library, shared BLAS, R

Hi, I am playing with hwriter examples given in "example" page. Here's what I've done: > library (hwriter) > > p = openPage ('table.html') > hwrite (1:5, p) > hwrite (iris[1:3, 1:3], p, row.bgcolor='#ffdc98') > closePage (p) > > browseURL('table.html') What I get is not as nice as what I see via the "example" page. I

Hi, I am a newbie with R. My environment is linux and I have a file. I call it barebone.R, which has one line: cat ('Hello World!\n') I execute this file as: R --no-save < barebone.R And it does what I expect. What I get is 20+/- lines of text, one of which is 'Hello World!'. How would I go about getting rid of all but the line I am after, 'Hello World!'?

Hi, I am having a problem with installing Rmpi package on redhat linux machine. The R I am using is version 2.10.1. Here’s what happens. > install.packages( ''Rmpi'' ) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL ''http://cran.cnr.Berkeley.edu/src/contrib/Rmpi_0.5-9.tar.gz'' Content type

Hi Everybody, I am having a problem with loading Biobase package. I typed 2 lines below at R prompt > source ("http://boconductor.org/biocLite.R") > biocLite (lib="/usr/local/lib/R/library") which attempted to install a bunch of packages with varying degree of success. Out of 29, 13 failed. Biobase is one of them. As a matter of fact, when I looked at logs, most

Hi, Suddenly, I find my little r is sick. Given: #! /usr/bin/env r library (hwriter) unlink ('tmp.html') p = openPage ('tmp.html') hwrite ("Hello World", p) closePage (p) browseURL ('tmp.html') It worked fine a few days ago, but now it says: r: error while loading shared libraries: libR.so: cannot open shared object file: No such file or

Hi Everybody, I made R (v. 2.11.1) from source with the following config option: ./configure --prefix=/mnt/ami-centos5.5-64bit-base \ --exec-prefix=/mnt/ami-centos5.5-64bit-base \ --with-tcltk All seemed to go well, but when I tested it with: /usr/sbin/chroot /mnt/ami-centos5.5-64bit-base R It told me: /bin/R: line 217:

Hi, Here are three plots: library(ggplot2) data(diamonds) randind <- sample(nrow(diamonds),1000,replace=FALSE) dsmall <- diamonds[randind,] qplot(carat, data=dsmall, geom="histogram",binwidth=1) qplot(carat, data=dsmall, geom="histogram",binwidth=.1) qplot(carat, data=dsmall, geom="histogram",binwidth=.01) What are ways to put these three plots on a single

I can plot to png's fine when i run this directly from the top-level script/console: png('diamonds.png');qplot(carat,price,data=diamonds);dev.off() But for some reason it's not working when that's in a function: (function(){png('diamonds.png');qplot(carat,price,data=diamonds);dev.off()})() I suspect this is because the qplot's return value must be

Hi, I've been struggling with this problem the last few days and finally discovered it's happening at a very fundamental level. Going through Stephen Turner's tutorial on ggplot2, I entered these base graphics commands: > with(diamonds, plot(carat,price)) > with(diamonds, plot(carat,price), xlab="Weight in Carats", ylab="Price in USD",

Hello, this following code give a nice png: /library(ggplot2) i <- 1 png(file=paste('test ',i,'.png',sep='')) qplot(carat, data=diamonds, fill=color,geom='histogram')+scale_y_continuous(i) dev.off() / I would like to get more files, but the following code doesn't make any file: /library(ggplot2) for (i in 1:2) { png(file=paste('test

Hi all, Is there any way for me to to string in the argument of qplot or ggplot? for example qplot(x='carat',y='price',data=diamonds,geom=c('point','smooth')) instead of qplot(x=carat,y=price,data=diamonds,geom=c('point','smooth')) Thanks!! Regards, TszKin Julian [[alternative HTML version deleted]]

Suppose that I'm working on Hadley's diamond dataset and I want to review the relationship between price, colour and carat. I might run the following: library(ggplot2) #plot scatter and add some hex binning q<-qplot(carat,price,data=diamonds, geom=c("hex"), main="Variability of Diamond Prices by Carat and Colour") #facet to get one scatter for

Good day, Sometimes, sparse.model.matrix outputs a dgCMatrix which has column names consisting of factor levels that were not in the original dataset. The first factor appears to be correctly transformed, but the following factors don't. For example: diamonds <- as.data.frame(ggplot2::diamonds) > colnames(sparse.model.matrix(~ . -1, diamonds)) [1] "carat"

I currently use lattice functions to produce multiple pages of plots using the "layout" argument to specify the number of rows and columns of panels, e.g., xyplot(price ~ carat | clarity, diamonds, layout = c(2, 2)) This results in 2 pages of 4 panels each. "diamonds" is a data.frame distributed with ggplot2. I would like to do the same with ggplot2 but have been

Hi Hadley: I'm practicing writing a document using MikTex but can't make qplot to execute. It works when using 'plot' though. Is this a normal behaviour? \documentclass[9pt]{article} \title{ggplot2 example} \begin{document} \maketitle \section*{Examples of using ggplot2} The goal is to be able to import ggplot2 graphics into the annual report. Hadley Wickham has done a great

Hi, I'm using the gridExtra package to combine some graphs like in the arrangeGrob example. Each of the graphs has a title but they appear much larger than the overall combined plot title and left axis label. Does anyone know how I can control the style / size of the gridExtra labels? library(gridExtra) library(ggplot2) dsamp <- diamonds[sample(nrow(diamonds), 1000), ] p1 <-

It would be nice if R ignored more unicode white space characters. For example, if I have "\u2028" in a command (which I get from a line-break in keynote) I get the following error: > qplot(carat, price, data = diamonds, colour=clarity) Error: unexpected input in "qplot(carat, price, data = diamonds, ?" And occasionally have such problems when copying and pasting from