similar to: Deleting rows or cols that do not meet cut off

Hi, I'm fairly new to R but I have a large dataset (300000 obs) containing patient material. Some patients came 2-9 times during the three year observation period. The patients are identified by a unique idnr, the sessions can be distinguished using the session date. How can I recode the date of the session to a session id (1-9). This would be necessary to obtain information and do some

the content of th character vector (of length 1) is as follows: a <- "something2 ....pat1 name1 pat2 something2....pat1 name2 pat2....pat1 name3 pat2 " I would like to extract the character bewteen pat1 and pat2. That's to say, I would like to get a vecter of c("name1", "name2","name3"). What I did is use strsplit() twise. But I wonder if there

Dear R-users! I am using R 1.7.0, under Windows XP. Having some hospital discharge data (admission date and discharge date for each patient), I want to get the number of patients in the hospital on a given date. My data look like (simple example): > x <- data.frame(patid=c("pat1", "pat2"), adm.date = c("15.03.2002", "16.03.2002"),

Hello, Everyone, I am a student an a new learner of R and I am trying to do my homework in R. I have 10 files need to be read and process seperately. I really want to write the codes into something like "macro" to save the lines instead of repeating 10 times of similar work. The following is part of my codes and I only extracted three lines for each repeating section. data.1 <-

Hi, I'm try to collect a list of methods/packages available in R for doing in-string variable/symbol substitution, e.g. someFcn("pi=${pi}"), anotherFcn("pi=@pi@") and so on becomes "pi=3.141593". I am aware of the following: ** gsubfn() in the 'gsubfn' package, e.g. > gsubfn( , , "pi = $pi, 2pi = `2*pi`") [1] "pi = 3.14159265358979,

I'm working with genotype data in a frequency table: > a=matrix(1:16, nrow=4) > rownames(a)=c("AA","AT","TA","TT") > a [,1] [,2] [,3] [,4] AA 1 5 9 13 AT 2 6 10 14 TA 3 7 11 15 TT 4 8 12 16 'AT' and 'TA' are essentially the same, and I'd like to combine (add) the rows to reflect

I'm creating an ANOVA model. Is there a way to pull in consecutive columns of variables for the test? Example: aov1<-aov(y~x1+x2+REG[,2:num], data=REG) I'm not looking for interaction effects, I just want to create a model for the first few columns of variables (exact number and names will vary) and a few other predetermined variables (in the example I named them x1 and x2). Thanks

What am I missing here? Both of my column headers in the 'FREQ' table are found in the 'genotype'; however, they aren't being recognized. > colnames(FREQ) [1] "X17362526" "X17362627" > colnames(genotype) [1] "X17362311" "X17362316" "X17362346" "X17362420" "X17362421" "X17362422"

Dear all, Attached is a description of my data, graph and the problem which I need help with. Hope you have time to open the file and help me out. Many thanks, Jenny ---------------------------------

Hello, All, GWAF 1.2 R.Version() is below. system(lme.batch.imputed( phenfile = 'phenfile.csv', genfile = 'CARe_imputed_release.0.fhsR.gz', pedfile='pedfile.csv', phen='phen1', covar=c('covar1','covar2'), kinmat='imputed_fhs.kinship.RData', outfile='imputed.FHS.IBC.GWAF.LME.output.0.txt' )) Gives the error messages: Error in

Dear list, I have the following text to parse (originating from readLines as some lines have unequal size), st = c("START text1 1 text2 2.3", "whatever intermediate text", "START text1 23.4 text2 3.1415") from which I'd like to extract the lines starting with "START", and group the subsequent fields in a data.frame in this format: text1 text2

Hello all, Can any of you R gurus help me out? I?m not all that great at stats to begin with, and I?m also learning the R ropes (former SAS user). Here?s what I need help with? I have a nested sample design and ran a nested anova, but I don?t know how to interpret the results habitat (four different types) is nested in site (three types), and site is nested in gear (two types)

Hi, I applied a linear mixed effect model in my data using the nlme package. lme2<-lme(distance~temperature*condition, random=~+1|trial, data) and then anova. I want to ask if it is posible to get the least squares means for the interaction effect and the corresponding 95%ci. And then plot this values. Thank you Panagiotis -- View this message in context:

Dear R-helper, Please suggest some methods for my question below. We measured the amount of protein A in patient blood in pre-treatment and post-treatment condition from 32 patients. -------------------------------------------- Pre-treatment Post-treatment Pat1 25 28 Pat2 19 15 Pat3 94

Hi Everyone, I have a question regarding the construction of 3D graphs in 'R', BUT these graphs also need to illustrate movement (with time) of the prostate gland (using radiological techniques). I am not sure how to do this in 'R' although I'm sure there is some way of doing it. Below, I have copied and pasted some of the data with which I'm working on. The data

Full_Name: Martin O'Gorman Version: OS: Submission from: (NULL) (84.176.63.149) I have been looking at the PPC package and have a question. As the input data is comma separated, shouldn?t the command to read in the raw (no batch) mass spec data indicate that sep=?,? (marked below) ? Otherwise, the data read in is the pair of values (m/z,intensity). It is not obvious why that should be.

Earl F. Glynn asks: > -----Original Message----- > From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch] On Behalf Of Earl F. Glynn > Sent: Tuesday, 15 August 2006 8:44 AM > To: r-help at stat.math.ethz.ch > Subject: [R] Help with workaround for: Function '`[`' is not in thederivatives table > > # This works fine: > > a <- 1

Hi, how is it possible to retrieve the corresponding tau value for each observed data pair (x(t) y(t), t=1,...,n) when doing a quantile regression like rq.fit <- rq(y~x,tau=-1). Thank you for your help. Jaci --

Hi, When the Dovecot 1.0.rc19 IMAP server encounters X-UID headers with gaps in them, it hangs indefinitely. I've attached a sample mailbox (in mbox format) which repeatably exhibits this behavior. The mbox contains only three messages with the following X-UIDs in order: 774, 785, 787. If I remove the X-UID headers from each message, Dovecot handles the mailbox without any problems. UW-IMAP

Dear all, Can anybody tell me how to export a 3d figure made with the plot3d function? I'm careless about whether it's still interactive or not in another format, as long I can get it out of R. Thanks! Alejandro Gonz?lez Departamento de Biodiversidad y Conservaci?n Real Jard?n Bot?nico Consejo Superior de Investigaciones Cient?ficas Claudio Moyano, 1 28014 Madrid, Spain Tel +0034