similar to: Confusion regarding environments invoked by "source" command

Dear All I have a program that breaks at the following lines of code: bigfunction = { ... object1 = myfunction(x) object2 = strsplit(object1, ",")[[1]] ... } where myfunction is defined elsewhere outside of bigfunction. The error I get is "error in strsplit() -- object1 not found". However, when I insert browser() into my code so that the above reads, bigfunction = {

R: 2.12.1 OS X Colleagues I am working with lattice graphics for the first time and I am confused by some aspects of controlling these graphics. The most pressing issue is the following: I can print the graphics without problems with the command: print(MYFUNCTION(SOMEOBJECT) However, I would like to add margin text (this terminology might not apply in this setting). I am able to do so with

I run R 2.1.1 in a Linux environment (RedHat 9) although my question is not platform-specific. Consider the following: > A <- c("Prefix-aaa", "Prefix-bbb", "Prefix-ccc") > B <- strsplit(A, "-") > B [[1]] [1] "Prefix" "aaa" [[2]] [1] "Prefix" "bbb" [[3]] [1] "Prefix" "ccc" How

Colleagues, Using R2.7.0 in OS X, I am having trouble understanding the command textConnection. My situation is as follows: 1. I am trying to read a lengthy file (45000 lines) that has headers ~ every 1000 lines. read.table (or its variants) fail because of the recurrent headers. 2. My present approach is the following: a. use readLines to read the file, save as an array b. use grep

I have a function myFunction(beta,x) where beta is a vector of coefficients and x is a data frame (think of it as a matrix). I want to optimize the function myFunction() by ONLY changing beta, i.e. x stays constant, with 4 constraints. I have the following code (with a separate source file for the function): rm(list=ls()) source('mySourceFile')

Colleagues, I am using R 2.4.0 on both a Mac (10.4.8) and Linux (RedHat 9). To read data from an Excel spreadsheet, I do "save as" in Excel, then select the "Text (tab-delimited)" format. The resulting file uses a tab separator and I can usually read the file using read.delim. Sometimes, the header row contains embedded carriage returns. When I view the file,

I am interested in running R commands asynchronously. My first choice is in the same R session that I am currently in. Here, the goal would be to run something like RunAsynchSameSession(myfunction(), "outputname.rda") Once RunAsynchSameSession had started myfunction(), RunAsynchSameSession would complete immediately. myfunction would keep going. It is OK if execution of the

Hi, I have imported three text files into R using read.table. Their variables are called d, e and f. I want to run a function on all the possible combinations of these three files. The only way I know how to do that is like this: bigfunction(d,e) bigfunction(d,f) bigfunction(e,d) bigfunction(e,f) bigfunction(f,e) bigfunction(f,d) Is there an easier way? I will have five files later on, so

Colleagues, Hopefully a simple problem: I want to delete a column with a known name from a dataframe. I could write: FRAME <- FRAME[, names(FRAME) != NAMETODELETE] or FRAME <- FRAME[, !names(FRAME) %in% c(NAME1, NAME2, ETC)] Is there some simpler means to accomplish this? Dennis Dennis Fisher MD P < (The "P Less Than" Company) Phone: 1-866-PLessThan (1-866-753-7784)

Colleagues, I want to create the following array: "A1", "A2", "A3", "B1", "B2", "B3", "C1", "C2", "C3" I recall that there is a trick using "c" or "paste" permitting me to form all combinations of c("A", "B", "C") and 1:3. But, I can't recall the

Colleagues, I have some text: TEXT <- c("a", "bb;ccc", "dddd;eeeee;ffffff") I want to retrieve the portion of each element before the first semicolon. I can split each element using strsplit: SPLIT <- strsplit(TEXT, ";") This yields: > SPLIT [[1]] [1] "a" [[2]] [1] "bb" "ccc" [[3]] [1] "dddd"

It would be convenient to have something like Rgui runfist="myfunction()" in Windows. The reason: AFAIK Rgui does not accept piped input (RGui < myfile.R does not seem to work). A solution could be to put a few fuctions in Rprofile and then give the name for one of these functions to be executed at startup as a command line parameter to Rgui. Can something like this be done? --

It would be convenient to have something like Rgui runfist="myfunction()" in Windows. The reason: AFAIK Rgui does not accept piped input (RGui < myfile.R does not seem to work). A solution could be to put a few fuctions in Rprofile and then give the name for one of these functions to be executed at startup as a command line parameter to Rgui. Can something like this be done? --

Colleagues, I have created a list in the following manner: TEST <- list(c("A1", "A2"), c("B1", "B2"), c("C1", "C2")) I now want to delete one element from the list, e.g., the third. The command TEST[[3]] yields (as expected): [1] "C1" "C2" The command TEST[[-3]] yields: Error:

Colleagues, I am interesting in opening a PDF document via the command line from both Windows, OS X, and Linux ( R version 2.8.0). I found a command openPDF in Biobase. However, I would rather execute the command myself. For example, in OS X: > system("open filename.pdf") is successful. Is there a comparable command line command for Windows or Linux? Dennis Dennis Fisher

Colleagues, I am trying to understand how R (2.12.1) obtains the PATH environment variable in Windows (7 or Vista). Startup {base} directs one to: "R_ENVIRON" -- which equals "" in my systems R_HOME/etc/Renviron.site -- which does not exist Next, it directs to: R_HOME/etc/Rprofile.site -- which also does not exist (the expected behavior in a "factory-fresh"

Colleagues After reading in some clinical data, I discovered that the subject ID column contains entries only for the first record for each individual; subsequent rows are recorded as NA. For example: > 1 > NA > NA > NA > NA > 2 > NA > NA > NA > NA > 3 > NA > NA > ... I can think of various approaches to replace the NA values with appropriate

Colleagues: I have encountered the following situation: SERIES OF COMMANDS source("File1") MORE COMMANDS source("File2") Optimally, I would like File1 and File2 to be merged into a single file (FileMerged). However, if I wrote the following: SERIES OF COMMANDS source("FileMerged") MORE COMMANDS I encounter an error: the File2 portion of FileMerged

Colleagues R 2.8.0; OS X, Vista, Ubuntu Linux In some instances, when I create a graphic using plot(XVAR, YVAR), it would be valuable to know the values that R will display on the y-axis (e.g., if the range of data is 0-70, it might display 0, 10, 30, 50, 70). Is there a simple means to access these values? Also, in some instances, additional ticks appear between the displayed values

Colleagues R 2.10.1 on a Mac I read in textfiles using readLines, then I process those files, then I use R to execute another program. Occasionally those files contain characters other than letter / numbers / routine punctuation marks. For example, a bullet (option-8 on a Mac) triggers the problem. Although R can read and process those characters, the other program cannot so I would like to