similar to: two plots side-by-side with persp3d(rgl)

Dear R-users, within the rgl-package, I would have a question about the usage of persp3d in combination of rgl.viewpoint. I am not able to figure out how to let a 3D plot rotating around likewise the example in ?rgl.viewpoint. It seems that when I use persp3d(...) I see something on my screen, which is different from what I get when it's rotating. Is there any different behavior between

Dear R-users, I am going to try to be as clearer as possible, showing also an example. 1) I have a function (in my real case it's much more complex) 2) I use "optim" to minimize 3) I want to use as method L-BFGS-B for several reasons 4) I know I could use "trace=6" (in "control") in order to see "live" the procedure 5) I would like to see separately the

Dear R-users, I am working with some grid-search optimization for 13 values of an object function. At glance one may compute the object function for each possible combination of set of parameters, but in my case would not be feasible: taking for example 13 possible values for each parameters like, in logarithm scale, 10^seq(-3,3,.5) will lead to 13^13 combinations of results. As a second trial

Hello R-users, I have downloaded and installed a binary version for Windows OS of ImageMagick (ImageMagick6.5.6-10-q16-windows-dll.exe), I have installed the rgl package and i've tried running the following example from ?movie3d() library(rgl) open3d() plot3d( cube3d(col="green") ) M <- par3d("userMatrix") play3d( par3dinterp( userMatrix=list(M,

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Dear R users, I have been trying to draw the following 3d graphs: The solid region bounded above by the paraboloid z = 9 - x2 - y2 and below by the unit circle in the xy-plane. I wanted to visualize the solid region bounded by those two graphs. I could draw those two 3d graphs separately, but I could not get those two to work in one single plot. Here's my code for the paraboloid: x <-

Dear all, I have tried to plot a triangular matrix with the function persp3d(rgl). for example z=rbind(c(1,NA,NA,NA),c(5,3,NA,NA),c(4,2,9,NA),c(8,6,5,11)) x=1:4 y=1:4 persp3d(x,y,z,color="gray") The two extreme points are not plotted (value=1 and value=10). It seems because the half of the matrix have 'NA' and perp3d need planar quadrilateral face. So I decided to use the

Hi, I want to format my axis in my persp3d plot. With my data, which I attached I created a persp3d plot with the following code, which I summarized from different code snippets I found: library(rugarch)library(rgl)library(fGarch)fd <-as.data.frame(modelfit,which ='density')color <-rgb(85,141,85,maxColorValue=255)x <-seq(-0.2,0.2,length=100)y <-c(1:2318)f

G'day everyone, I've been trying to get an interactive OpenGL plot to work from within Python 2.6 using Rpy2 and the persp3d function. The problem is that the plot seems to freeze upon activation. All interactivity is lost even though it works fine when run from within the R console (version 2.11.1). Is this a known issue? Any ideas as to what might be causing this, or possibly how to fix

Dear expeRts, I am a new user of rgl, below is my first trial to plot a simple function in 3d. I managed to put the axes in the right locations, but: (1) The xlab, ylab, and zlab arguments are ignored; how can I put in axes labels? (2) Since I removed the axes in persp3d() the viewport is too small; is it possible to keep the size of the viewport? (3) The box is not correctly drawn, there

Hi guys, I hit on a problem when I use rgl. Could you try to run the code here in this link and see why the first persp3d gives a red bounding box and the second shows black? http://rafb.net/p/g1i7ur33.html (sorry for not pasting the code here directly but my previous email got filtered by this list so I suspect my code looks like spam to the spam filter) I'm expecting black color to be

Dear R-users, I'm struggling in R in order to "squeeze" a matrix without using a for-loop. Although my case is a bit more complex, the following example should help you to understand what I would like to do, but without the slow for-loop. Thanks in advance, Carlo Giovanni Camarda A <- matrix(1:54, ncol=6) # my original matrix A.new <- matrix(nrow=3, ncol=6) # a new

Dear R-users, I would like to know whether there is a way to extract a diagonal of an inverse matrix without computing the inverse of the matrix itself. The size of my matrices are really huge and, also using sparse matrix, computing the inverse leads to storage problems and low speed. In other words, given a square matrix A, I aim to know diag(B), where B=solve(A), without computing solve(A).

Hallo! ? I just want to make a 3D plot of a surface of a cone and want to plot some single points around. ? I tried wireframe but cannot find how to plot single points ? I tried scatterplot3d but there the surface is not simple to plot. And: How can I rotate the point of view by the z-axis ? I tried persp3d but how can I add some single points? ? Example: ? library(lattice) library(scatterplot3d)

I am trying to figure out how to use rgl package for animation. It appears that this is done using the play3d() function. Below I have some sample code that plots a 3D path and puts a sphere at the point farthest from the origin (which in this case also appears to be at the end of the path). What I would like to do is animate the movement of another sphere along the length of the path

Two questions related to creating animated movies with rgl: 1. I've created an rgl scene with 5 different views I want to display in a movie, but I'd like to insert pauses (say, 5 seconds) at each view. How can I do this? I first created 5 userMatrix's, then play3d( par3dinterp( userMatrix=list(M1, M2, M3, M4, M5)), ,duration=2*60/5) ) then tried simply repeating each twice,

Dear R-friends, I use optim(par=c(mystartingpoints), fn=myloglikelihoodfunction, gr=NULL, method=c("L-BFGS-B"), ## I would like to do not use any bounds control=list(trace=6, ## just to see what it's going on maxit=c(20000)), ## to be sure the it doesn't stop reaching the max iterations

Hello, I'd like to draw a graphic using different color line segments to represent microarray data. It simply likes this: Data=cbind(c(1, 2, -1, 3, -2.2), c(1, 3, -1, -1.8, 4)) The first col No represents y'axis position (negative down and positive up). The second col No represents a length of segment (negative segment should be on left of y, and positive on right). Also the

Hi All, I would like to be able to use play3d() to translate the view along a surface, and zoom in and out. All the examples in play3d() function description are of rotations. I would also like to know if there is a method of creating a legend of for the 3d surface using rgl package. Thanks in advance. Chibisi [[alternative HTML version deleted]]

Dear R-users, I would like to ask whether it's possible (for sure it would be), to plot each rows (or columns) in different graphs and in the same figure region without using the function "par" and then struggling around with "axes" and labels etc. Luckily, I would always have "rows + columns = even number" and the same "ylim". The next one could be a