Displaying 20 results from an estimated 1000 matches similar to: "R with MKL"
2008 Nov 04
2
Building with MKL on Ubuntu
Hi all,
I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried:
./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl
-lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl
-lmkl_lapack' --enable-R-shlib
and got:
R is now configured for x86_64-unknown-linux-gnu
Source directory: .
Installation directory: /usr/local
2008 Nov 04
2
Building with MKL on Ubuntu
Hi all,
I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried:
./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl
-lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl
-lmkl_lapack' --enable-R-shlib
and got:
R is now configured for x86_64-unknown-linux-gnu
Source directory: .
Installation directory: /usr/local
2008 Jan 25
4
Problem building R with Intel MKL v10 BLAS
NO
Hi. I'm not sure if this is an R-help or R-devel problem, so I'm
starting here in the hope that someone can help (and willing to go to
the other list if it's more appropriate). I think I am following all of
the instructions in the various manuals, but clearly I am missing something.
I have an Intel EM64T Dell with 2 dual-core Xeon processors running Red
Hat EL5. I would
2008 Apr 18
1
configure can't find dgemm in MKL10
Hi,
I'm trying to follow the R-admin instructions for using MKL10 as the external BLAS compiling R-2.6.2 under Linux on a RH EL head node of a cluster. The configure process seems to have problems when it checks for dgemm in the BLAS. I'm using configure as:
./configure CC=icc F77=ifort --with-lapack="$MKL" --with-blas="$MKL" where $MKL is defined as in R-admin
2012 Aug 21
1
make check fails two tests on RHEL 6 build
I am installing R 2.15.1 onto RHEL 6, using gcc 4.7.0 with Intel MKL
10.3.7 and the following environment:
export BLAS_LIBS="-Wl,--start-group
/usr/caen/intel-12.1/mkl/lib/intel64/libmkl_gf_lp64.a
/usr/caen/intel-12.1/mkl/lib/intel64/libmkl_sequential.a
/usr/caen/intel-12.1/mkl/lib/intel64/libmkl_core.a -Wl,--end-group
-lpthread"
export LAPACK_LIBS="-Wl,--start-group
2012 Dec 28
1
linux multi-threaded compilation is running only on one processor
Hello,
I compiled R-2.15.2 with linux intel compilers (see below).
when I execute some R code on a // 4 proc x 4 cores // server
(export MKL_NUM_THREADS = 16)
very often I have the situations where only one processor (4 cores) is
active instead of 4 (16 cores) !
do you know this fact depends on what ?
thank you !
P.S.
many functions of R are single-threaded,
is there a simple way to make them
2011 Nov 03
4
How to used MKL (not revolution-mkl) with Debian packages
Hi folks,
if you want to use MKL (the fast BLAS I have tested on my Thinkpad T410)
with the R 2.14.0 built as Debian/Ubuntu packages available on CRAN mirror,
the following tricks may works for without some known side-effects (likes
openmp breaking issues), you may try to build your own libblas.so.3gf.0
with following command:
$ gfortran -L/opt/intel/lib/intel64 -liomp5
2005 May 26
3
Buidling R on Linux (Itanium) fails (PR#7897)
Full_Name: Reinhold Bader
Version: 2.1.0
OS: SLES 9
Submission from: (NULL) (129.187.48.1)
I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel
Libraries
for BLAS/LAPACK
Optimizations used were -O3, and the
FPICFLAGS="-fpic"
was exported.
The build failed with the following error message:
...
dumping R code in package 'methods'
Saving namespace image
2019 Jan 28
8
nlminb with constraints failing on some platforms
I've noticed unstable behavior of nlminb on some Linux systems. The problem can be reproduced by compiling R-3.5.2 using gcc-8.2 and running the following snippet:
f <- function(x) sum( log(diff(x)^2+.01) + (x[1]-1)^2 )
opt <- nlminb(rep(0, 10), f, lower=-1, upper=3)
xhat <- rep(1, 10)
abs( opt$objective - f(xhat) ) < 1e-4 ## Must be TRUE
The example works perfectly when
2023 Feb 01
2
dyn.load(now = FALSE) not actually lazy?
On Linux, if I have a .so file that has a dependency on another .so, and I
`dyn.load(now=FALSE)` the first one, R seems to try to resolve the symbols
immediately, causing the load to fail.
For example, I have `libtorch` installed on my HPC. Note that it links to
various libs such as `libcudart.so` and `libmkl_intel_lp64.so.2` which
aren't currently in my library path:
? ~ ldd
2014 Jan 31
1
INTEL MKL 11.1.0.080 R 3.0.2
I am having trouble of compiling R 3.0.2 with MKL 11.1.0.080; tried the
following resources:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor
http://cran.r-project.org/doc/manuals/R-admin.html#MKL
http://software.intel.com/en-us/comment/reply/328415
and getting the following:
*checking for dgemm_ in -Wl,--start-group -lmkl_gf_lp64 -lmkl_gnu_thread
-lmkl_core -Wl,--end-group
2017 Oct 30
2
Debate: Shall some of Microsoft R Open Code be ported to mainstream R?
I think the thing that is missing is a simple way for end users on windows to replace blas/lapack libraries with MKL-a package that you install that puts the libraries in the right place.
Microsoft provides something for their distro, but we don't have the equivalent if you get R from cran.
On 29 October 2017 at 22:01, Kenny Bell wrote:
| User here: incorporating Intel's MKL, as MRO
2019 Feb 01
1
nlminb with constraints failing on some platforms
> On 1 Feb 2019, at 10:00, Martin Maechler <maechler at stat.math.ethz.ch> wrote:
>
> ........
>>> sessionInfo()
>> R version 3.5.2 (2018-12-20)
>> Platform: x86_64-pc-linux-gnu (64-bit)
>> Running under: Scientific Linux release 6.4 (Carbon)
>
>> Matrix products: default
>> BLAS/LAPACK:
2019 Feb 01
3
nlminb with constraints failing on some platforms
Hello,
R 3.5.2 on ubuntu 18.04. sessionInfo() at the end.
Works with me, same results, cannot reproduce the error.
f <- function(x) sum( log(diff(x)^2+.01) + (x[1]-1)^2 )
opt <- nlminb(rep(0, 10), f, lower=-1, upper=3)
str(opt)
xhat <- rep(1, 10)
all.equal(opt$par, xhat, tol=0) # good: 5.53 e-7
#[1] "Mean relative difference: 5.534757e-07"
all.equal(opt$objective,
2017 Apr 20
1
Intel MKL compiling issue
On our Scientific Linux 6, there is
gcc --version
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17)
and later version (a symbolic at HOME to the system directory),
export MKL=/home/jhz22/11.3.3.210/mkl
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \
--enable-R-shlib --with-lapack \
2015 Sep 02
4
Build R with MKL and ICC
After a few days of reading and headache, I finally gave a try at
building R from source with Intel MKL and ICC. Documentation and posts
on this topic are rather incomplete, sometime fantasist et do not give
much explanations about configure options.
As I am not sure if mine is correct, I would appreciate some advices and hints.
OS: Fedora 22
parallel_studio_xe_2016
Hardware : 8 Thread(s) per
2019 Jan 31
1
nlminb with constraints failing on some platforms
Prof Nash, Prof Galanos
Is it possible to use a generic code stub in front of packages that use
optimx to improve optimx use or curtail it according to the requirements?
Best Regards
Amit
+91 7899381263
________________________________________________________________________
Please request Skype as available
5th Year FPM (Ph.D.) in Finance and Accounting Area
Indian Institute
2015 Jul 01
5
additional leap second
hi,
Index: leap_second/src/library/base/R/zdatetime.R
===================================================================
--- leap_second/src/library/base/R/zdatetime.R (revision 68608)
+++ leap_second/src/library/base/R/zdatetime.R (working copy)
@@ -24,7 +24,8 @@
"1979-12-31", "1981-6-30", "1982-6-30", "1983-6-30",
2015 Sep 04
2
Build R with MKL and ICC
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> > After a few days of reading and headache, I finally gave a try at
> > building R from source with Intel MKL and ICC. Documentation and posts
> > on this topic are rather incomplete, sometime fantasist et do not give
> >
2016 Dec 01
2
Different results for cos,sin,tan and cospi,sinpi,tanpi
Hi,
i try sin, cos, and tan.
> sapply(c(cos,sin,tan),function(x,y)x(y),1.23e45*pi)
[1] 0.5444181 0.8388140 1.5407532
However, *pi results the following
> sapply(c(cospi,sinpi,tanpi),function(x,y)x(y),1.23e45)
[1] 1 0 0
Please try whether the following becomes all right.
diff -ruN R-3.3.2.orig/src/nmath/cospi.c R-3.3.2/src/nmath/cospi.c
--- R-3.3.2.orig/src/nmath/cospi.c 2016-09-15