similar to: Is it normal that normalize.loess does not tolerate a single NA value?

Dear cateGOry experts, hyperGTest documentation states that YEAST cannot be used as 'annotation' when evaluating gene ontology representation status for a given set of 'geneIds'. Because I am using a custom print I believe I need to create my own data package to use as the annotation file for 'annotation'. Can someone please describe how to make a data package that will

Hello, I am trying to load the package SparseM. It seems that I have successfully installed SparseM (version 0.78), but I did not succeed in loading the SparseM package into R 2.7. Does anybody know a trick for loading SparseM? Thanks in advance, Heike > library(SparseM,lib.loc=my.lib.loc) Error in packageDescription(pkg)$Version : $ operator is invalid for atomic vectors In addition:

I have produced a series of graphs with the png command, however when I have finally printed these out the black text appears to have a colour shadow with blue or red on either side of the letter. I tried increasing my res to 1200 and this improved it somewhat, but the text is still not sharp and occassionally these "shadows" will still print. I initially thought this was an issue with

I would like to create a 3d scatterplot that is interactive in the sense that I can spin it on its axes to better visualize some PCA results I have. What are the options in R? I've looked at RGL and perhaps it will suffice but it wasn't apparent from the documentation I found. Any demo scripts available for a package that will work? Mark -- Mark W. Kimpel MD ** Neuroinformatics **

Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many

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Hi! I would like to know how well ext3/(ext2) will tolerate underlaying errors (I am planning to use loop-AES backed ext3 fs). So if there is 1024 bytes corruption of data what will be the worst case: - If this data belongs to some file, this part of data(file) has been lost? - If this data belongs to superblock, I have to repair ext3 and use another superblock? - If this data belongs to

I'm writing to ask if R Core would make file.exists more Windows tolerant when the argument has a trailing slash. This has been discussed by users a few times here, I know it is not a new topic. But it is not a solved problem, yet. I acknowledge that CRAN packages exist which fix this by replacing file.exists(), but it seems more elegant to me to fix the problem in R itself. R Core goes to

>What are you actually using for authentication ? We are using Quest Authentication Services (formerly Vintela Authentication Services), which is a Kerberos/LDAP/Active Directory client for UNIX & Linux. Authentication and Identity Mapping appears to work correctly, I can log on and see my uid/gid/correct groups list with SSH and group-based access for files and directories appears to

I wrote: > Also I wrote: > > However, xl fails on config files which are missing the final > > newline. This should be fixed for 4.2. > > My patch for this didn''t make it into 4.2 RC4. Should this go into 4.2.0 or be held for 4.2.1 (or is it not 4.2.x material at all) ? Ian. From: Ian Jackson <ian.jackson@eu.citrix.com> Subject: [PATCH] libxl: Tolerate xl