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..., sizeof(tempname), "%s.%d", of1name, j) >= sizeof(tempname)) Rf_error("file name is too long"); BTW: most OSes systems have a path limits that are no lower than 256 so you should allow at least as much. Cheers, Simon > On May 29, 2019, at 11:49 AM, jing hua zhao <jinghuazhao at hotmail.com> wrote: > > Dear R-developers, > > I am struggling with packaging with sprintf and snprintf() as the following WARNINGS from gcc 9.x, > > hap_c.c:380:46: warning: ?%d? directive output may be truncated writing between 1 and 10 bytes into a region of size betw...

...i.nlm.nih.gov/15214961/ https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1044-7 https://www.nature.com/articles/d41586-021-02211-4 https://www.theverge.com/2020/8/6/21355674/human-genes-rename-microsoft-excel-misreading-dates On Tue, Apr 16, 2024 at 3:46?AM jing hua zhao <jinghuazhao at hotmail.com> wrote: > > Dear R-developers, > > I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, > > Gene,SNP,prot,log10p &gt...

...point representation cuts out at 1e+/-308 or so. If you want to go outside that range, you may need explicit manipulation of the log values. qnorm() itself seems quite happy with much smaller values: > qnorm(-5000, log=TRUE) [1] -99.94475 -pd > On 21 Jun 2019, at 17:11 , jing hua zhao <jinghuazhao at hotmail.com> wrote: > > Dear Rui, > > Thanks for your quick reply -- this allows me to see the bottom of this. I was hoping we could have a handle of those p in genmoics such as 1e-300 or smaller. > > Best wishes, > > > Jing Hua > > _____________________...

I had trouble with some tests for the survival suite last night that I cannot explain. Framework: Ubuntu Linux, R2.11. For testing survival I have a separate directory and Makefile. I pull everything into the local .RData, no packages, library, or namespace. (It's easier to add test modifications to a routine in a chain of calls). A test of survreg + psline would fail because

On 28.05.2018 11:07, G?bor Cs?rdi wrote: > stdin() is not the same as file("stdin"), see the note in ?stdin. In particular stdin() works in an interactive session but not when R -f / Rscript is used, since it does not wait for the user to input anything: $ R -f readLines.R R version 3.5.0 (2018-04-23) -- "Joy in Playing" Copyright (C) 2018 The R Foundation for Statistical

Dear R-developers, I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, Gene,SNP,prot,log10p YWHAE,13:62129097_C_T,1433E,7.35 YWHAE,4:72617557_T_TA,1433E,7.73 Both read.cv() and readr::read_csv() consider prot(ein) name as (possibly confused by

...the absolute pathname that counts." Admittedly, it's been several years when I last looked into it, but at the time when I wrote that I spent lots of time investigating it. /Henrik > > Cheers, > Simon > > > > > > On May 29, 2019, at 11:49 AM, jing hua zhao <jinghuazhao at hotmail.com> wrote: > > > > Dear R-developers, > > > > I am struggling with packaging with sprintf and snprintf() as the following WARNINGS from gcc 9.x, > > > > hap_c.c:380:46: warning: ?%d? directive output may be truncated writing between 1 and 10 bytes...

...hing is that it works fine with the documentation data and even with this data there were times it could be tweaked to work (therefore PAN.txt, test.rda and test.log were as intended there). I have extracted the pan.f, pan.R from the package and leave the Bash/R scripts all here, https://github.com/jinghuazhao/R/tree/master/tests, short of adding a driver program to pan.f and debug without R but before doing that any idea/insight would be greatly appreciated. Thank you so much, Jing Hua Zhao [[alternative HTML version deleted]]

...1e+/-308 or so. If you want to go outside that range, you may need explicit manipulation of the log values. qnorm() itself seems quite happy with much smaller values: > >> qnorm(-5000, log=TRUE) > [1] -99.94475 > > -pd > >> On 21 Jun 2019, at 17:11 , jing hua zhao <jinghuazhao at hotmail.com> wrote: >> >> Dear Rui, >> >> Thanks for your quick reply -- this allows me to see the bottom of this. I was hoping we could have a handle of those p in genmoics such as 1e-300 or smaller. >> >> Best wishes, >> >> >> Jing Hua &...

...nt character (.), optionally followed by an exponent part (an e or E character followed by an optional sign and a sequence of digits)." [Of course, there would be nothing to stop e.g. "1433E1" from being converted to numeric.] -pd > On 16 Apr 2024, at 12:46 , jing hua zhao <jinghuazhao at hotmail.com> wrote: > > Dear R-developers, > > I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, > > Gene,SNP,prot,log10p...

Hello, Well, try it: p <- .Machine$double.eps^seq(0.5, 1, by = 0.05) z <- qnorm(p/2) pnorm(z) # [1] 7.450581e-09 1.228888e-09 2.026908e-10 3.343152e-11 5.514145e-12 # [6] 9.094947e-13 1.500107e-13 2.474254e-14 4.080996e-15 6.731134e-16 #[11] 1.110223e-16 p/2 # [1] 7.450581e-09 1.228888e-09 2.026908e-10 3.343152e-11 5.514145e-12 # [6] 9.094947e-13 1.500107e-13 2.474254e-14 4.080996e-15

...NINGS were initially given with https://www.stats.ox.ac.uk/pub/bdr/gcc9/README.txt and those specification might as well used in --configure-args above. Besst regards, Jing Hua ________________________________ From: R-devel <r-devel-bounces at r-project.org> on behalf of jing hua zhao <jinghuazhao at hotmail.com> Sent: 29 May 2019 15:49 To: r-devel at r-project.org Subject: [Rd] use of buffers in sprintf and snprintf Dear R-developers, I am struggling with packaging with sprintf and snprintf() as the following WARNINGS from gcc 9.x, hap_c.c:380:46: warning: ?%d? directive output may...

...point representation cuts out at 1e+/-308 or so. If you want to go outside that range, you may need explicit manipulation of the log values. qnorm() itself seems quite happy with much smaller values: > qnorm(-5000, log=TRUE) [1] -99.94475 -pd > On 21 Jun 2019, at 17:11 , jing hua zhao <jinghuazhao at hotmail.com> wrote: > > Dear Rui, > > Thanks for your quick reply -- this allows me to see the bottom of this. I was hoping we could have a handle of those p in genmoics such as 1e-300 or smaller. > > Best wishes, > > > Jing Hua > > ___________________________...

Dear R list, I calculated a two-sided p values according to 2*(1-pnorm(8.104474)), which gives 4.440892e-16. However, it appears to be 5.30E-16 by a colleague and 5.2974E-16 from SAS. I tried to get around with mvtnorm package but it turns out to be using pnorm for univariate case. I should have missed some earlier discussions, but for the moment is there any short answer for a higher

...tside that range, you may need explicit manipulation of > the log values. qnorm() itself seems quite happy with much smaller values: > > > >> qnorm(-5000, log=TRUE) > > [1] -99.94475 > > > > -pd > > > >> On 21 Jun 2019, at 17:11 , jing hua zhao <jinghuazhao at hotmail.com> > wrote: > >> > >> Dear Rui, > >> > >> Thanks for your quick reply -- this allows me to see the bottom of > this. I was hoping we could have a handle of those p in genmoics such as > 1e-300 or smaller. > >> > >> Best...

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421Kb to 115Kb consider

...> the log values. qnorm() itself seems quite happy with much smaller values: >> > >> >> qnorm(-5000, log=TRUE) >> > [1] -99.94475 >> > >> > -pd >> > >> >> On 21 Jun 2019, at 17:11 , jing hua zhao <jinghuazhao at hotmail.com> >> wrote: >> >> >> >> Dear Rui, >> >> >> >> Thanks for your quick reply -- this allows me to see the bottom of >> this. I was hoping we could have a handle of those p in genmoics such as >&...

...> the log values. qnorm() itself seems quite happy with much smaller values: >> > >> >> qnorm(-5000, log=TRUE) >> > [1] -99.94475 >> > >> > -pd >> > >> >> On 21 Jun 2019, at 17:11 , jing hua zhao <jinghuazhao at hotmail.com> >> wrote: >> >> >> >> Dear Rui, >> >> >> >> Thanks for your quick reply -- this allows me to see the bottom of >> this. I was hoping we could have a handle of those p in genmoics such as >&...

On our Scientific Linux 6, there is gcc --version gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) and later version (a symbolic at HOME to the system directory), export MKL=/home/jhz22/11.3.3.210/mkl export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64 ./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \ --enable-R-shlib --with-lapack \

Hi All, I wonder if there should be one character for quote= in read.table, i.e., > args(read.table) function (file, header = FALSE, sep = "", quote = "\"'", dec = ".", ... I have a file containing the following lines, 08248-GOTERM 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process 08279-GOTERM 3'-phosphoadenosine