[R-sig-Debian] R Package: 'ggbreak' in Dockerfile

Ivan Krylov
2024-10-15T13:38:28Z

? Tue, 15 Oct 2024 13:14:49 +0000
"Gerber, Lauren J" <lauren.gerber at helsinki.fi> ?????:

> RUN R -e "BiocManager::install('ggbreak')"

> ENTRYPOINT ["/app/webscraping_combined_boxplots.sh"]

> Error in library(ggbreak) : there is no package called 'ggbreak'
> Execution halted

Does the container build process produce any kind of log output? What
is the library path where the package ends up being installed by
BiocManager?

When you run R from webscraping_combined_boxplots.sh, do you set R_LIBS
or R_LIBS_USER or any other related environment variables (documented
in ?Startup) that may affect the set of libraries considered by R when
loading the 'ggbreak' package? In particular, is the library where
BiocManager::install('ggbreak') installs the package present in the
list returned by .libPaths()?

--
Best regards,
Ivan