[R] How to stack two Stack manhattan plots?

Ana Marija
Thu, 11 Jun 2020 21:26:49 -0000

I tried it,
ggplot( data = tmp.tidy) +geom_point( aes(y = BP,x = CHR,color=key)
,position = "jitter" )
I got the attached

On Thu, Jun 11, 2020 at 4:18 PM <cpolwart at chemo.org.uk>
wrote:
>
> Try adding
> position = "jitter" to the geom_point(...
>
>
>
> On 11 Jun 2020 21:41, Ana Marija <sokovic.anamarija at gmail.com>
wrote:
>
> Hello,
>
> I tried your code and this is what I got
>
> I really need two groups side by side shown per chromosome as it is here:
> https://imgur.com/a/pj40c
> on the image there are 4 groups I do have only two
>
> On Thu, Jun 11, 2020 at 11:52 AM <cpolwart at chemo.org.uk> wrote:
> >
> > On 2020-06-11 15:59, Ana Marija wrote:
> > > yes all in one plot.
> > > So I want key (and therefore color)to be "Pold" and
"Pnew" as those I
> > > am comparing per CHR
> > > so I used facet_wrap(~CHR) to create a graph per chromosome (on
x-axis)
> > > On the end x-axis would have two strikes of Pold and Pnew
(different
> > > colors) per one chromosome, and CHR would go from 1 to 22
> > >
> >
> >
> > ggplot( data = tmp.tidy) +
> > geom_point( aes(
> >              y = BP,
> >              x = CHR,
> >              color=key) )
> >
> > ?
>
>