N Meriam
2019-Jan-16 19:00 UTC
[R] R help: fviz_nbclust’ is not available (for R version 3.5.2)
Hello, I'm struggling to install a function called "fviz_nbclus". My code is the following: pkgs <- c("factoextra", "NbClust") install.packages(pkgs) library(factoextra) library(NbClust) # Standardize the data load("df4.rda") library(FunCluster) install.packages("fviz_nbclust") #fviz_nbclust(df4, FUNcluster, method = c("silhouette", "wss", "gap_stat")) Installing package into ?C:/Users/DELL/Documents/R/win-library/3.5? (as ?lib? is unspecified) Warning in install.packages : package ?fviz_nbclust? is not available (for R version 3.5.2) Best, Meriam
Sarah Goslee
2019-Jan-16 19:15 UTC
[R] R help: fviz_nbclust’ is not available (for R version 3.5.2)
Hi, fviz_nbclust is a function within the package factoextra. Once you have installed the package and loaded it, you do not need to explicitly install the function. You probably also don't need FunCluster - I think you may be confusing that package with the FUNcluster argument to the fviz_nbclust function. Do take a look at ?fviz_nbclust for help and a working example. library(factoextra) library(NbClust) # Standardize the data load("df4.rda") fviz_nbclust(df4, FUNcluster, method = c("silhouette", "wss", "gap_stat")) Sarah On Wed, Jan 16, 2019 at 2:00 PM N Meriam <meriam.nef at gmail.com> wrote:> > Hello, > I'm struggling to install a function called "fviz_nbclus". > > My code is the following: > pkgs <- c("factoextra", "NbClust") > install.packages(pkgs) > library(factoextra) > library(NbClust) > # Standardize the data > load("df4.rda") > library(FunCluster) > > install.packages("fviz_nbclust") > #fviz_nbclust(df4, FUNcluster, method = c("silhouette", "wss", "gap_stat")) > > Installing package into ?C:/Users/DELL/Documents/R/win-library/3.5? > (as ?lib? is unspecified) > Warning in install.packages : > package ?fviz_nbclust? is not available (for R version 3.5.2) > > Best, > Meriam > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.-- Sarah Goslee (she/her) http://www.numberwright.com
Jeff Newmiller
2019-Jan-16 19:22 UTC
[R] R help: fviz_nbclust’ is not available (for R version 3.5.2)
Concept 1: You don't install functions... you install packages that have functions in them. There is a function fviz_nbclust in factoextra. Concept 2: Once a package is installed, you do NOT have to install it again, e.g. every time you want to do that analysis. Making the installation part of your script is not advised. Concept 3: Typically we do use the library function with a package name at the beginning of every session where we want to use functions from that package. However, that is optional... you could also just invoke the function directly using factoextra::fviz_nbclust(...blahblah...). Having the library function shortens this and if the package is not installed it provides a clear error message that can be a reminder to the user to install the package. Execute your code line by line and solve the first error you encounter by examining the error message and reviewing what that line of code is designed to do. On January 16, 2019 11:00:07 AM PST, N Meriam <meriam.nef at gmail.com> wrote:>Hello, >I'm struggling to install a function called "fviz_nbclus". > >My code is the following: >pkgs <- c("factoextra", "NbClust") >install.packages(pkgs) >library(factoextra) >library(NbClust) ># Standardize the data >load("df4.rda") >library(FunCluster) > >install.packages("fviz_nbclust") >#fviz_nbclust(df4, FUNcluster, method = c("silhouette", "wss", >"gap_stat")) > >Installing package into ?C:/Users/DELL/Documents/R/win-library/3.5? >(as ?lib? is unspecified) >Warning in install.packages : > package ?fviz_nbclust? is not available (for R version 3.5.2) > >Best, >Meriam > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.-- Sent from my phone. Please excuse my brevity.
N Meriam
2019-Jan-16 19:48 UTC
[R] R help: fviz_nbclust’ is not available (for R version 3.5.2)
Thanks for your valuable clarifications. I tried all the steps again but the problem remains. In fact, "fviz_nbclust" is a function inside the package "factoextra". I run each step very carefully but the problem remains...It doesn't make sense because I have installed factoextra. This warning appears: could not find function "fviz_nbclust" On Wed, Jan 16, 2019 at 1:22 PM Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote:> > Concept 1: You don't install functions... you install packages that have functions in them. There is a function fviz_nbclust in factoextra. > > Concept 2: Once a package is installed, you do NOT have to install it again, e.g. every time you want to do that analysis. Making the installation part of your script is not advised. > > Concept 3: Typically we do use the library function with a package name at the beginning of every session where we want to use functions from that package. However, that is optional... you could also just invoke the function directly using factoextra::fviz_nbclust(...blahblah...). Having the library function shortens this and if the package is not installed it provides a clear error message that can be a reminder to the user to install the package. > > Execute your code line by line and solve the first error you encounter by examining the error message and reviewing what that line of code is designed to do. > > On January 16, 2019 11:00:07 AM PST, N Meriam <meriam.nef at gmail.com> wrote: > >Hello, > >I'm struggling to install a function called "fviz_nbclus". > > > >My code is the following: > >pkgs <- c("factoextra", "NbClust") > >install.packages(pkgs) > >library(factoextra) > >library(NbClust) > ># Standardize the data > >load("df4.rda") > >library(FunCluster) > > > >install.packages("fviz_nbclust") > >#fviz_nbclust(df4, FUNcluster, method = c("silhouette", "wss", > >"gap_stat")) > > > >Installing package into ?C:/Users/DELL/Documents/R/win-library/3.5? > >(as ?lib? is unspecified) > >Warning in install.packages : > > package ?fviz_nbclust? is not available (for R version 3.5.2) > > > >Best, > >Meriam > > > >______________________________________________ > >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >https://stat.ethz.ch/mailman/listinfo/r-help > >PLEASE do read the posting guide > >http://www.R-project.org/posting-guide.html > >and provide commented, minimal, self-contained, reproducible code. > > -- > Sent from my phone. Please excuse my brevity.-- Meriam Nefzaoui MSc. in Plant Breeding and Genetics Universidade Federal Rural de Pernambuco (UFRPE) - Recife, Brazil