[R] Genuine relative paths with R

Jeff Newmiller
Sat, 06 Oct 2018 21:19:32 -0000

Please use reply-all to keep the conversation on the mailing list.

I found no enlightenment in your response to Ista.

a) I have many years of experience in a variety of operating systems and
languages, and there are a variety of approaches taken to handle
self-configuration. R is not special in having to cede some responsibility to
the OS if you want portability. I have no problems making my R code work
unchanged on various platforms (and in multiple directories on the same machine
of needed) simply by making all my path references local.

b) If you want to communicate to us about what mechanisms you cannot find in R,
you are going to have to use more specific words than "this function".
Ista already mentioned setwd, which works perfectly fine with relative paths,
and the (optional) file.path function can construct paths without even assuming
that "/" is the separator. Regardless of language I find that changing
the working directory as the script runs makes for brittle code... simply using
paths relative to the working directory avoids the risk of leaving the current
directory changed if the processing fails.

c) Note that R does not provide elaborate support for sharing directories full
of scripts containing functions... if you want to build complex code you should
be building packages and using the R CMD check facility to prepare your code for
use in other environments.

d) Some wild guesses at what you might find useful: ?Startup, littler package,
?commandArgs.

On October 6, 2018 1:43:34 PM PDT, Olivier GIVAUDAN <olivier_givaudan at
hotmail.com> wrote:
>Hi Jeff,
>
>Thanks for sharing your workaround.
>
>I guess my last answer to Ista answers your question as well.
>
>To me this function (an equivalent of 'cd', say) should be
>platform-independent.
>
>Best regards,
>
>Olivier
>________________________________
>De : Jeff Newmiller <jdnewmil at dcn.davis.ca.us>
>Envoy? : samedi 6 octobre 2018 19:31
>? : r-help at r-project.org; Olivier GIVAUDAN; r-help at r-project.org
>Objet : Re: [R] Genuine relative paths with R
>
>I stopped using hardcoded absolute paths inside R scripts years ago,
>and I suspect that is fairly common practice. That is, I almost never
>enter a path starting with "/" or "c:/" in an R script.
>
>The key concession you have to make is to start your R session in your
>working directory using OS-specific mechanisms, and then reference your
>code and data relative to that directory. RStudio project files offer
>one mechanism for doing this; using CD from the OS command line is
>another, and using the file-browser double-click mechanism on .RData
>files is another (though I prefer to avoid that these days due to
>potential global environment contamination).
>
>Perhaps you can be more specific about what facilities you are
>expecting to find. You should also mention what OS you typically use
>and how you normally start R.
>
>On October 6, 2018 4:48:44 AM PDT, Olivier GIVAUDAN
><olivier_givaudan at hotmail.com> wrote:
>>Dear R users,
>>
>>I would like to work with genuine relative paths in R for obvious
>>reasons: if I move all my scripts related to some project as a whole
>to
>>another location of my computer or someone else's computer, if want
my
>>scripts to continue to run seamlessly.
>>
>>What I mean by "genuine" is that it should not be necessary to
>hardcode
>>one single absolute path (making the code obviously not
"portable" -
>to
>>another place - anymore).
>>
>>For the time being, I found the following related posts, unfortunately
>>never conclusive or even somewhat off-topic:
>>https://stackoverflow.com/questions/1815606/rscript-determine-path-of-the-executing-script
>>https://stackoverflow.com/questions/47044068/get-the-path-of-current-script/47045368
>>http://r.789695.n4.nabble.com/Script-auto-detecting-its-own-path-td2719676.html
>>
>>So I found 2 workarounds, more or less satisfactory:
>>
>>
>>1.  Either create a variable "ScriptPath" in the first lines
of each
>of
>>my R scripts and run a batch (or shell, etc.) to replace every single
>>occurrence of "ScriptPath <-" by "ScriptPath <-
[Absolute path of the
>R
>>script]" in all the R scripts located in the folder (and possibly
>>subfolders) of the batch file.
>>2.  Or create an R project file with RStudio and use the package
>"here"
>>to get the absolute path of the R project file and put all the R
>>scripts related to this project in the R project directory, as often
>>recommended.
>>
>>But I am really wondering why R doesn't have (please tell me if
I'm
>>wrong) this basic feature as many other languages have it (batch,
>>shell, C, LaTeX, SAS with macro-variables, etc.)?
>>Do you know whether the language will have this kind of function in a
>>near future? What are the obstacles / what is the reasoning for not
>>having it already?
>>
>>Do you know other workarounds?
>>
>>Best regards,
>>
>>Olivier
>>
>>       [[alternative HTML version deleted]]
>>
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>
>--
>Sent from my phone. Please excuse my brevity.

--
Sent from my phone. Please excuse my brevity.