The rms package has had several updates in version 4.1-0: * Fixed orm.fit to not create penalty matrix if not needed (penalties are not yet implemented anyway) * Added yscale argument to plot.Predict * Added Wald test simulation to orm help file * Added example in help file for plot.anova.rms of adding a line combining the effects of two predictors in dot chart * Fixed grid interpretation error in survplot.survfit * Changed plot.anova.rms to use dotchart3 instead of dotchart2 * Fixed bug in summary.rms - was taking reciprocal of effect ratio with orm even if not loglog family (thanks: Yong Hao Pua <puayonghao at gmail.com> * Removed link to print.lm, summary.lm in ols.Rd * Added ntrans argument to plot.anova.rms * Fixed handling of intercepts in Rq, validate.Rq * Removed residuals.Glm, residuals.rms (also from Rd, NAMESPACE) * Removed other .rms methods and other remnants from fooling S+ dispatcher * Fixed bug in lm.pfit when penalty used (thanks: Yong Hao Pua <puayonghao at gmail.com>) * Fixed bug in calibrate.default for ols (thanks: Andy Bush) * Change print.contrast.rms to insert NA for SE if fun is not the identity function * Added margin argument to plot.anova.rms to print selected stats in right margin of dot chart * Added anova argument to plot.Predict to allow overall association test statistics to be added to panels * Fixed bug in val.prob in which the logistic model was re-fitted instead of fixing coefficients at 0,1. This resulted in model statistics (including c-index) to always be favorable even when predictions were worse than change. Thanks: Kirsen Van Hoorde <Kirsten.VanHoorde at esat.kuleuven.be> * Fixed bug in survdiffplot where conf.int was always overridden by value from survfit. Thanks: Kamil Fijorek <kamilfijorek at gmail.com> * Fixed bug in grid= for survplot.* and survdiffplot. Thanks: Kamil Fijorek * Fixed rms.s to account for possible offset in names(nmiss). Thanks: Larry Hunsicker * Fixed psm.s to not compute Dxy if simple right censoring is not in effect. Thanks: I.M. Nolte * rcs: respect system option fractied, passed to rcspline.eval; can be used to get old behavior * Gls: as nlme 3.1-113 exports more functions, removed nlme::: -- Frank E Harrell Jr Professor and Chairman School of Medicine Department of Biostatistics Vanderbilt University _______________________________________________ R-packages mailing list R-packages at r-project.org https://stat.ethz.ch/mailman/listinfo/r-packages