[R] DESeq package install error

nathalie
Tue, 06 Mar 2012 10:20:39 -0000

HI, I would like to update my DESeq package version on R-2-14 using
bioclite() and get this message, could somebody help please?


 > biocLite("DESeq")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'DESeq'
Installing package(s) into ?/nfs/team82/nac/R-modules?
(as ?lib? is unspecified)
trying URL
'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/DESeq_1.6.1.tar.gz'
Content type 'application/x-gzip' length 1853430 bytes (1.8 Mb)
opened URL
=================================================downloaded 1.8 Mb

* installing *source* package ?DESeq? ...
** libs
cc -std=gnu99 -I/software/R-2.14.1/lib64/R/include -I/usr/local/include
-fpic -O2 -c pval.c -o pval.o
cc -std=gnu99 -shared -L/usr/local/lib64 -o DESeq.so pval.o
-L/software/R-2.14.1/lib64/R/lib -lR
installing to /nfs/team82/nac/R-modules/DESeq/libs
** R
** inst
** preparing package for lazy loading
Error in library(pkg, character.only = TRUE, logical.return = TRUE,
lib.loc = lib.loc) :
package ?locfit? does not have a NAMESPACE and should be re-installed
ERROR: lazy loading failed for package ?DESeq?
* removing ?/nfs/team82/nac/R-modules/DESeq?



--
 The Wellcome Trust Sanger Institute is operated by Genome Research
 Limited, a charity registered in England with number 1021457 and a
 company registered in England with number 2742969, whose registered
 office is 215 Euston Road, London, NW1 2BE.