Hi R users, I am doing multiscale bootstrapping for clustering through pvclust package. I have large data set (observations 182 and variables 5546). When i tried to make bootstrapping, then i got message as "Bootstrap (r = 0.5)............Error: cannot allocate vector of size 117.3 Mb". I am new R user and could not understand what is the problem and also don't know the easiet solution. If someone knows, pls help me. Thanks in advance. Ram Kumar Basnet Graduate student. [[alternative HTML version deleted]]
ram basnet wrote:> Hi R users, > > I am doing multiscale bootstrapping for clustering through pvclust package. I have large data set (observations 182 and variables 5546). When i tried to make bootstrapping, then i got message as "Bootstrap (r = 0.5)............Error: cannot allocate vector of size 117.3 Mb". > I am new R user and could not understand what is the problem and also don't know the easiet solution. > If someone knows, pls help me.Please read ?Memory Uwe Ligges> Thanks in advance. > > Ram Kumar Basnet > Graduate student. > > > > [[alternative HTML version deleted]] > > > > ------------------------------------------------------------------------ > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
To see some useful discussions of this problem in various settings search R-Help for the phrase "cannot allocate vector of size". Tom ram basnet wrote:> > Hi R users, > ? > I am doing multiscale bootstrapping for clustering through?pvclust > package. I have large data set (observations 182 and variables 5546). When > i tried to make bootstrapping, then i got message as "Bootstrap (r > 0.5)............Error: cannot allocate vector of size 117.3 Mb". > I am new R user and could not understand what is the problem and also > don't know the easiet solution. > If someone knows, pls help me. > Thanks in advance. > ? > Ram Kumar Basnet > Graduate student. > > > > [[alternative HTML version deleted]] > > > ______________________________________________ > R-help at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > >-- View this message in context: http://www.nabble.com/Error%3A-can-not-allocate-vector-of-117.3-Mb-tp19330258p19331629.html Sent from the R help mailing list archive at Nabble.com.