[R-es] Problema con Bioconductor y R 3.0.2

"Marcuzzi, Javier Rubén"
2013-10-23T13:51:37Z

Estimado Eric

Seguramente como usted nombre en esta lista, están las intrucciónes
descriptas, pero por las dudas en esa documentación que usted nombra hay
una parte que copio y pego, ¿esos comandos andan o dan problemas al
actualizar?


    Update Installed /Bioconductor/ Packages

Bioconductor packages, especially those in the development branch, are
updated fairly regularly. To identify packages requiring update, start a
new session of R and enter

|source("http://bioconductor.org/biocLite.R")
biocLite()              ## R version 3.0 or later
|

Use the argument |ask=FALSE| to update old packages without being
prompted. For older versions of |R|, use the command |biocLite(NULL)|.
Read the help page for |?biocLite| for additional details.


      Recompiling installed /Bioconductor/ packages

Rarely, underlying changes in the operating system require ALL installed
packages to be recompiled for source (C or Fortran) compatibility. One
way to address this might be to start a new R session and enter

|source("http://bioconductor.org/biocLite.R")
pkgs <- rownames(installed.packages())
biocLite(pkgs)
|

As this will reinstall all currently installed packages, it likely
involves a significant amount of network bandwidth and compilation time.
All packages are implicitly updated, and the cumulative effect might
introduce wrinkles that disrupt your work flow.

[ Back to top <http://master.bioconductor.org/install/#top> ]


    Troubleshoot Package Installations

Use the commands

|library(BiocInstaller)
biocValid()             ## R version 3.0 or later
|

to flag packages that are either out-of-date or too new for your version
of Bioconductor. The output suggests ways to solve identified problems,
and the help page |?biocValid| lists arguments influencing the behavior
of the function.


Javier


El 23/10/2013 10:08 a.m., Jorge I Velez escribió:
> Hola Eric,
> Cual es tu sessionInfo()?
> Gracias,
> Jorge.-
>
> Sent from my phone. Please excuse my brevity and misspelling.
>
>> On Oct 23, 2013, at 6:59 AM, neo <ericconchamunoz@gmail.com>
wrote:
>>
>> No se bien si hacer la pregunta aca, pero en la lista de correo de
>> bioconductor he tenido algunos problemas para hacer la consulta.
>>
>> Por un error actualice R de la version 15.0.3 a la 3.0.2, y ahora no me
>> corren las librerias de bioconductor. Al intentar usar alguna me
aparece
>> el mensaje :
>>
>> Your Bioconductor is out-of-date, upgrade to version 2.13 by following
>> instructions at http://bioconductor.org/install.
>>
>> Pero cuando sigo las instrucciones de esa pagina, al tratar de
>> actualizar recibo el mismo mensaje.
>>
>> Alguien sabe como reparar este problema ??
>>
>> Saludos y muchas gracias,
>>
>> Eric.
>>
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