[Rd] R 3.4 and mclapply assertion failure - is this a bug?

Yan Alperovych
2017-05-02T11:12:43Z

Dear all,?
I am not sure if this is a bug, so I prefer to post it here before filing.
After upgrading to 3.4 I encounter the following message with mclapply:
Assertion failure at kmp_runtime.cpp(6480): __kmp_thread_pool == __null.OMP:
Error #13: Assertion failure at kmp_runtime.cpp(6480).OMP: Hint: Please submit a
bug report with this message, compile and run commands used, and machine
configuration info including native compiler and operating system versions.
Faster response will be obtained by including all program sources. For
information on submitting this issue, please
see?http://www.intel.com/software/products/support/.
The complete pdf of what console produces is
here:https://www.dropbox.com/s/navugg28gqne14p/R%20Console.pdf?dl=0
The batch with commands to (hopefully) reproduce it is
here:https://www.dropbox.com/s/8pd0ij3kowigdlc/20170430%20-%20R%20mclapply%20bug%20report.r?dl=0
The data for the reproducible example is here:
https://www.dropbox.com/s/2enoeapu7jgcxwd/z.Rdata?dl=0
Note that this behavior was not present in R 3.3.3 on the same machine and all
the batch was working without any errors.
The sessionInfo():
R version 3.4.0 (2017-04-21)Platform: x86_64-apple-darwin15.6.0 (64-bit)Running
under: macOS Sierra 10.12.4
Matrix products: defaultBLAS:
/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylibLAPACK:
/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale:[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:[1] parallel ?compiler ?stats ? ? graphics ?grDevices
utils ? ? datasets ?methods ? base ? ??
other attached packages:?[1] data.table_1.10.4 ? ? ?numbers_0.6-6 ? ? ? ?
?microbenchmark_1.4-2.1 zoo_1.8-0 ? ? ? ? ? ? ?doParallel_1.0.10 ? ?
?iterators_1.0.8 ? ? ???[7] foreach_1.4.3 ? ? ? ? ?RSclient_0.7-3 ? ? ? ?
stringi_1.1.5 ? ? ? ? ?stringr_1.2.0 ? ? ? ? ?lubridate_1.6.0 ? ? ? ?plyr_1.8.4
? ? ? ? ? ?
loaded via a namespace (and not attached):?[1] Rcpp_0.12.10 ? ? lattice_0.20-35
?codetools_0.2-15 grid_3.4.0 ? ? ? gtable_0.2.0 ? ? magrittr_1.5 ? ?
scales_0.4.1 ? ? ggplot2_2.2.1 ???[9] lazyeval_0.2.0 ? tools_3.4.0 ? ?
?munsell_0.4.3 ? ?colorspace_1.3-2 tibble_1.3.0 ? ?

Thank you in advance for help/hints,?Yan
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