[Rd] NAMESPACE problems

Prof Brian Ripley
Wed, 03 Aug 2011 05:34:26 -0000

On Wed, 3 Aug 2011, robin hankin wrote:

> Hi.
>
> I am having difficulty following section 1.6.6 of the R-extensions manual.

Also in following the posting guide: which version of R is this (it
matters here!)?

It seems you are failing to import the functions you are attempting to
take over as S4 generics: most likely plot() so you need

importFrom(graphics, plot)

at least in R 2.13.x.

>
> I am trying to update the Brobdingnag package to include a NAMESPACE file
(the
> untb package requires the Brobdingnag package).
>
> Without the NAMESPACE file, the package passes R CMD check cleanly.
>
> However, if I include a NAMESPACE file, even an empty one, R CMD check
> gives the following error in 00install.out:
>
>
>
> wt118:~/packages% cat Brobdingnag.Rcheck/00install.out
> * installing *source* package ?Brobdingnag? ...
> ** R
> ** inst
> ** preparing package for lazy loading
> Creating a generic for ?max? in package ?Brobdingnag?
>    (the supplied definition differs from and overrides the implicit generic
>    in package ?base?: Classes: "nonstandardGenericFunction",
"standardGeneric")
> Creating a generic for ?min? in package ?Brobdingnag?
>    (the supplied definition differs from and overrides the implicit generic
>    in package ?base?: Classes: "nonstandardGenericFunction",
"standardGeneric")
> Creating a generic for ?range? in package ?Brobdingnag?
>    (the supplied definition differs from and overrides the implicit generic
>    in package ?base?: Classes: "nonstandardGenericFunction",
"standardGeneric")
> Creating a generic for ?prod? in package ?Brobdingnag?
>    (the supplied definition differs from and overrides the implicit generic
>    in package ?base?: Classes: "nonstandardGenericFunction",
"standardGeneric")
> Creating a generic for ?sum? in package ?Brobdingnag?
>    (the supplied definition differs from and overrides the implicit generic
>    in package ?base?: Classes: "nonstandardGenericFunction",
"standardGeneric")
> Error in setGeneric(f, where = where) :
>  must supply a function skeleton, explicitly or via an existing function
> Error : unable to load R code in package 'Brobdingnag'
> ERROR: lazy loading failed for package ?Brobdingnag?
> * removing ?/Users/rksh/packages/Brobdingnag.Rcheck/Brobdingnag?
> wt118:~/packages%
>
>
> AFAICS, all the setGeneric() calls are pretty much like this:
>
> setGeneric("getX",function(x){standardGeneric("getX")})
>
>
>
> Can anyone advise?
>
>
> thank you
>
> Robin
>
>
> --
> Robin Hankin
> Uncertainty Analyst
> hankin.robin at gmail.com
>
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> https://stat.ethz.ch/mailman/listinfo/r-devel
>

--
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595