R help - Oct 2024 - Invalid term in model formula with gmm after formula.tools is loaded

Hi everyone,

I am using the gmm function from the gmm package and encountered an
unexpected error. No model can be estimated if I load formula.tools?I need
to restart R each time. Here is a simple reproducible example:


















*library(gmm)data(Finance)r <- Finance[1:300, 1:10]rm <- Finance[1:300,
"rm"]rf <- Finance[1:300, "rf"]z <- as.matrix(r-rf)zm
<- rm-rfres <- gmm(z
~ zm, x = ~ zm)summary(res)# Now the model cannot be estimated is
formula.tools is loadedlibrary(formula.tools)res <- gmm(z ~ zm, x = ~ zm) #
invalid term in model formula# Even if I detach
detach("package:formula.tools", unload = TRUE)res <- gmm(z ~ zm, x
= ~ zm)
# invalid term in model formula*

Once formula.tools is loaded in my environment, I cannot estimate any model
with the gmm function. I need to restart R each time.

Is there a way to avoid restarting R once formula.tools has been loaded?

Best,
Aristide

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? Wed, 30 Oct 2024 17:45:29 +0100
Elys?e Aristide <ariel92and at gmail.com> ?????:
> I am using the gmm function from the gmm package and encountered an
> unexpected error. No model can be estimated if I load formula.tools?I
> need to restart R each time.
I can reproduce the problem:

library(gmm)
data(Finance)
r <- Finance[1:300, 1:10]                                              
rm <- Finance[1:300, "rm"]                             
rf <- Finance[1:300, "rf"]
z <- as.matrix(r-rf) 
zm <- rm-rf
res <- gmm(z ~ zm, x = ~ zm)
library(formula.tools)
gmm(z ~ zm, x = ~ zm) # signals an error

Looking at the traceback(), I see the formula being transformed into NA
~ NA at some point:

10: terms.formula(formula, data = data) # <-- error happens here
9: terms(formula, data = data)
8: model.frame.default(data = object$data, formula = NA ~ NA, drop.unused.levels
= TRUE,
       na.action = "na.pass")
7: model.frame(data = object$data, formula = NA ~ NA, drop.unused.levels = TRUE,
       na.action = "na.pass") # <-- formula is already NA ~ NA here
6: eval(mfh, parent.frame())
5: eval(mfh, parent.frame())
4: getDat(object$g, object$x, data = object$data)
3: getModel.baseGmm(all_args, ...)
2: getModel(all_args, ...)
1: gmm(z ~ zm, x = ~zm)

It seems that in base R, as.character(z ~ zm) returns a three-element
character vector, while with formula.tools loaded, it only returns a
single string, 'z ~ zm'. This breaks formula manipulation in getDat().

An immediate workaround is to replace the method provided by
formula.tools with one that immediately delegates back to R:

.S3method('as.character', 'formula', function (x, ...)
NextMethod())
gmm(z ~ zm, x = ~ zm) # seems to work once again

(Is there a way to truly unregister an S3 method?)

Perhaps gmm::getDat could be made more robust by working directly on
the formula/call object instead of going through the string
representation.

-- 
Best regards,
Ivan

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