I am trying to install a package from github which has worked fine in the past, but now seems to be stuck on some new authentication issues.? Does anyone know how I can straighten myself out?? In theory, this is a public repository so I'm not sure why I even need authenticating for installation. Thanks, Rob The code: > devtools::install_github("DillonHammill/CytoExploreR") Using GitHub PAT from the git credential store. Error: Failed to install 'unknown package' from GitHub: ? HTTP error 401. ? Bad credentials ? Rate limit remaining: 50/60 ? Rate limit reset at: 2024-06-20 22:19:33 UTC > Using GitHub PAT from the git credential store. Error: unexpected symbol in "Using GitHub" > Error: Failed to install 'unknown package' from GitHub: Error: unexpected symbol in "Error: Failed to" >?? HTTP error 401. Error: unexpected symbol in "? HTTP error" >?? Bad credentials Error: unexpected symbol in "? Bad credentials" > >?? Rate limit remaining: 55/60 Error: unexpected symbol in "? Rate limit" >?? Rate limit reset at: 2024-06-20 21:12:27 UTC``` Error: unexpected symbol in "? Rate limit" > > **Include any associated screenshots or images here:** SESSIONINFO > sessionInfo() R version 4.4.1 (2024-06-14 ucrt) Platform: x86_64-w64-mingw32/x64 Running under: Windows 11 x64 (build 26120) Matrix products: default locale: [1] LC_COLLATE=English_United States.utf8 [2] LC_CTYPE=English_United States.utf8 [3] LC_MONETARY=English_United States.utf8 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.utf8 time zone: America/Chicago tzcode source: internal attached base packages: [1] stats???? graphics? grDevices utils???? datasets? methods base loaded via a namespace (and not attached): ?[1] vctrs_0.6.5?????? cli_3.6.2???????? rlang_1.1.4 stringi_1.8.4 ?[5] purrr_1.0.2?????? pkgload_1.3.4???? promises_1.3.0 shiny_1.8.1.1 ?[9] xtable_1.8-4????? glue_1.7.0??????? htmltools_0.5.8.1 httpuv_1.6.15 [13] pkgbuild_1.4.4??? ellipsis_0.3.2??? fastmap_1.2.0 lifecycle_1.0.4 [17] memoise_2.0.1???? stringr_1.5.1???? compiler_4.4.1 miniUI_0.1.1.1 [21] sessioninfo_1.2.2 fs_1.6.4????????? htmlwidgets_1.6.4 Rcpp_1.0.12 [25] urlchecker_1.0.1? later_1.3.2?????? digest_0.6.35 R6_2.5.1 [29] curl_5.2.1??????? usethis_2.2.3???? magrittr_2.0.3 tools_4.4.1 [33] mime_0.12???????? devtools_2.4.5??? profvis_0.3.8 remotes_2.5.0 [37] cachem_1.1.0
My guess is that this is related to you saving an expired Personal Access Token in your global git options or credentials store? Git is perfectly capable of using per-repo credentials... don't configure a credential in your global configuration and it won't fall back on using it to access random new repositories. On June 20, 2024 3:16:55 PM PDT, Robert Baer <rbaer at atsu.edu> wrote:>I am trying to install a package from github which has worked fine in the past, but now seems to be stuck on some new authentication issues.? Does anyone know how I can straighten myself out?? In theory, this is a public repository so I'm not sure why I even need authenticating for installation. > >Thanks, > >Rob > >The code: > >> devtools::install_github("DillonHammill/CytoExploreR") >Using GitHub PAT from the git credential store. >Error: Failed to install 'unknown package' from GitHub: >? HTTP error 401. >? Bad credentials > >? Rate limit remaining: 50/60 >? Rate limit reset at: 2024-06-20 22:19:33 UTC > > >> Using GitHub PAT from the git credential store. >Error: unexpected symbol in "Using GitHub" >> Error: Failed to install 'unknown package' from GitHub: >Error: unexpected symbol in "Error: Failed to" >>?? HTTP error 401. >Error: unexpected symbol in "? HTTP error" >>?? Bad credentials >Error: unexpected symbol in "? Bad credentials" >> >>?? Rate limit remaining: 55/60 >Error: unexpected symbol in "? Rate limit" >>?? Rate limit reset at: 2024-06-20 21:12:27 UTC``` >Error: unexpected symbol in "? Rate limit" >> >> **Include any associated screenshots or images here:** > > >SESSIONINFO > >> sessionInfo() >R version 4.4.1 (2024-06-14 ucrt) >Platform: x86_64-w64-mingw32/x64 >Running under: Windows 11 x64 (build 26120) > >Matrix products: default > > >locale: >[1] LC_COLLATE=English_United States.utf8 >[2] LC_CTYPE=English_United States.utf8 >[3] LC_MONETARY=English_United States.utf8 >[4] LC_NUMERIC=C >[5] LC_TIME=English_United States.utf8 > >time zone: America/Chicago >tzcode source: internal > >attached base packages: >[1] stats???? graphics? grDevices utils???? datasets? methods base > >loaded via a namespace (and not attached): >?[1] vctrs_0.6.5?????? cli_3.6.2???????? rlang_1.1.4 stringi_1.8.4 >?[5] purrr_1.0.2?????? pkgload_1.3.4???? promises_1.3.0 shiny_1.8.1.1 >?[9] xtable_1.8-4????? glue_1.7.0??????? htmltools_0.5.8.1 httpuv_1.6.15 >[13] pkgbuild_1.4.4??? ellipsis_0.3.2??? fastmap_1.2.0 lifecycle_1.0.4 >[17] memoise_2.0.1???? stringr_1.5.1???? compiler_4.4.1 miniUI_0.1.1.1 >[21] sessioninfo_1.2.2 fs_1.6.4????????? htmlwidgets_1.6.4 Rcpp_1.0.12 >[25] urlchecker_1.0.1? later_1.3.2?????? digest_0.6.35 R6_2.5.1 >[29] curl_5.2.1??????? usethis_2.2.3???? magrittr_2.0.3 tools_4.4.1 >[33] mime_0.12???????? devtools_2.4.5??? profvis_0.3.8 remotes_2.5.0 >[37] cachem_1.1.0 > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.-- Sent from my phone. Please excuse my brevity.
The place to start for such problems is always usethis::git_sitrep() Hadley On Thu, Jun 20, 2024 at 11:17?PM Robert Baer <rbaer at atsu.edu> wrote:> I am trying to install a package from github which has worked fine in > the past, but now seems to be stuck on some new authentication issues. > Does anyone know how I can straighten myself out? In theory, this is a > public repository so I'm not sure why I even need authenticating for > installation. > > Thanks, > > Rob > > The code: > > > devtools::install_github("DillonHammill/CytoExploreR") > Using GitHub PAT from the git credential store. > Error: Failed to install 'unknown package' from GitHub: > HTTP error 401. > Bad credentials > > Rate limit remaining: 50/60 > Rate limit reset at: 2024-06-20 22:19:33 UTC > > > > Using GitHub PAT from the git credential store. > Error: unexpected symbol in "Using GitHub" > > Error: Failed to install 'unknown package' from GitHub: > Error: unexpected symbol in "Error: Failed to" > > HTTP error 401. > Error: unexpected symbol in " HTTP error" > > Bad credentials > Error: unexpected symbol in " Bad credentials" > > > > Rate limit remaining: 55/60 > Error: unexpected symbol in " Rate limit" > > Rate limit reset at: 2024-06-20 21:12:27 UTC``` > Error: unexpected symbol in " Rate limit" > > > > **Include any associated screenshots or images here:** > > > SESSIONINFO > > > sessionInfo() > R version 4.4.1 (2024-06-14 ucrt) > Platform: x86_64-w64-mingw32/x64 > Running under: Windows 11 x64 (build 26120) > > Matrix products: default > > > locale: > [1] LC_COLLATE=English_United States.utf8 > [2] LC_CTYPE=English_United States.utf8 > [3] LC_MONETARY=English_United States.utf8 > [4] LC_NUMERIC=C > [5] LC_TIME=English_United States.utf8 > > time zone: America/Chicago > tzcode source: internal > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > loaded via a namespace (and not attached): > [1] vctrs_0.6.5 cli_3.6.2 rlang_1.1.4 stringi_1.8.4 > [5] purrr_1.0.2 pkgload_1.3.4 promises_1.3.0 shiny_1.8.1.1 > [9] xtable_1.8-4 glue_1.7.0 htmltools_0.5.8.1 httpuv_1.6.15 > [13] pkgbuild_1.4.4 ellipsis_0.3.2 fastmap_1.2.0 lifecycle_1.0.4 > [17] memoise_2.0.1 stringr_1.5.1 compiler_4.4.1 miniUI_0.1.1.1 > [21] sessioninfo_1.2.2 fs_1.6.4 htmlwidgets_1.6.4 Rcpp_1.0.12 > [25] urlchecker_1.0.1 later_1.3.2 digest_0.6.35 R6_2.5.1 > [29] curl_5.2.1 usethis_2.2.3 magrittr_2.0.3 tools_4.4.1 > [33] mime_0.12 devtools_2.4.5 profvis_0.3.8 remotes_2.5.0 > [37] cachem_1.1.0 > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- http://hadley.nz [[alternative HTML version deleted]]