R devel - Jan 2023 - rhub vs. CRAN fedora-*-devel, using armadillo & slapack

Le 10/01/2023 ? 10:44, RICHET Yann a ?crit?:
> Dear R-devel people,
>
> We are working to submit a package which is mainly a binding over a C++ lib
(https://github.com/libKriging) using armadillo.
> It is _not_ a standard RcppArmadillo package, because we also had to
provide a python binding... so there is a huge layer of cmake & scripting to
make it work with a standard armadillo (but using same version that
RcppArmadillo).
> It seems now working with almost all CRAN targets, but a problem remains
with fedora (clang & gcc) devel.
>
> Our issue is that the rhub docker is not well sync with the CRAN
fedora-clang-devel config:
> - failing on CRAN (without clear reason):
https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/rlibkriging-00check.html
I see? 2 candidates for? reasons of failing on CRAN:
 ?1. test time is 30 min while 15 min are allowed;
 ?2. your code try to get 30 threads while CRAN limits them to 2;

Try to make your tests shorter ( < 15 min) on 2 threads. May be it will 
help.

Best,
Serguei.
> - passing on rhub:
https://builder.r-hub.io/status/rlibkriging_0.7-3.tar.gz-20f7dc7562726497af7c678ab41f4dea
>
> So we cannot investigate and fix the problem.
>
> Note that we did quite strange things with the fedora platforms: include
explicitely slapack to provide simple precision for our (vanilla) armadillo...
>
> Do you have any idea, or even known problem in mind, that could be related
to this ?
>
> Best regards,
>
> --
> Dr. Yann Richet
> Institute for Radiological Protection and Nuclear Safety
(https://www.irsn.fr),
>    Department of Characterization of Natural Unexpected Events and Sites
> Office?: +33 1 58 35 88 84
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
Serguei Sokol
Ingenieur de recherche INRAE

Cellule Math?matiques
TBI, INSA/INRAE UMR 792, INSA/CNRS UMR 5504
135 Avenue de Rangueil
31077 Toulouse Cedex 04

tel: +33 5 61 55 98 49
email: sokol at insa-toulouse.fr
http://www.toulouse-biotechnology-institute.fr/en/technology_platforms/mathematics-cell.html

Le 10/01/2023 ? 11:37, Serguei Sokol a ?crit?:
> Le 10/01/2023 ? 10:44, RICHET Yann a ?crit?:
>> Dear R-devel people,
>>
>> We are working to submit a package which is mainly a binding over a 
>> C++ lib (https://github.com/libKriging) using armadillo.
>> It is _not_ a standard RcppArmadillo package, because we also had to 
>> provide a python binding... so there is a huge layer of cmake & 
>> scripting to make it work with a standard armadillo (but using same 
>> version that RcppArmadillo).
>> It seems now working with almost all CRAN targets, but a problem 
>> remains with fedora (clang & gcc) devel.
>>
>> Our issue is that the rhub docker is not well sync with the CRAN 
>> fedora-clang-devel config:
>> - failing on CRAN (without clear reason): 
>>
https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/rlibkriging-00check.html
> I see? 2 candidates for? reasons of failing on CRAN:
> ?1. test time is 30 min while 15 min are allowed;
> ?2. your code try to get 30 threads
Oops, it was 10 threads not 30 but it does not change the nature of a 
possible issue.
> while CRAN limits them to 2;
>
> Try to make your tests shorter ( < 15 min) on 2 threads. May be it 
> will help.
>
> Best,
> Serguei.
>
>> - passing on rhub: 
>>
https://builder.r-hub.io/status/rlibkriging_0.7-3.tar.gz-20f7dc7562726497af7c678ab41f4dea
>>
>> So we cannot investigate and fix the problem.
>>
>> Note that we did quite strange things with the fedora platforms: 
>> include explicitely slapack to provide simple precision for our 
>> (vanilla) armadillo...
>>
>> Do you have any idea, or even known problem in mind, that could be 
>> related to this ?
>>
>> Best regards,
>>
>> -- 
>> Dr. Yann Richet
>> Institute for Radiological Protection and Nuclear Safety 
>> (https://www.irsn.fr),
>> ?? Department of Characterization of Natural Unexpected Events and
Sites
>> Office?: +33 1 58 35 88 84
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>

-- 
Serguei Sokol
Ingenieur de recherche INRAE

Cellule Math?matiques
TBI, INSA/INRAE UMR 792, INSA/CNRS UMR 5504
135 Avenue de Rangueil
31077 Toulouse Cedex 04

tel: +33 5 61 55 98 49
email: sokol at insa-toulouse.fr
http://www.toulouse-biotechnology-institute.fr/en/technology_platforms/mathematics-cell.html