Bert Gunter
2022-Dec-10 18:20 UTC
[R] lattice: how to use a log scale on the x-axis with the bwplot function
If Deepayan's suggestion does not suit and especially *if* I understand
what you want to do correctly, then it seems to me that it is
straightforward to create the groups and group labels manually:
## in verbose detail to hopefully improve clarity
set.seed(123) ## for reprex
y <- runif(40,min=0, max= 10) ##*small* reprex
## cut y into 5 equally spaced groups labeled by log10 of the center
## of the intervals
yrng <- range(y)
eps <- .0001*c(-1,1)*diff(yrng) ## see ?cut
yrng <-yrng + eps
delta <- diff(yrng)/5 # 5 = number of intervals
brks <- seq(yrng[1], yrng[2],length.out =6)
labs <- round(log10(brks[-1] - delta/2), 2) ## log10 (centers)
groups <- cut(y,breaks = brks,
labels = paste0('10^',labs))
# creating the dataframe for the lattice functions
DF <- data.frame( y = y, groups = groups)
bwplot( y ~ groups
, data=DF
, scales = list(
y = list(log=T)
),
)
## Of course, ignore if I have misunderstood.
Cheers,
Bert
On Sat, Dec 10, 2022 at 8:03 AM Deepayan Sarkar <deepayan.sarkar at
gmail.com>
wrote:
> Log-scales for the "factor" variable in bwplot() is not allowed.
>
> You could, however, use the panel function panel.bwplot() with
> xyplot(num ~ num). The potential problem with that is the box widths,
> which panel.bwplot() will not know how to compute.
>
> See if the following gives you a reasonable starting point:
>
> DF <- within(DF, m <- tapply(y, groups, mean))
> xyplot(y ~ m, DF, scales = list(log = TRUE),
> panel = panel.bwplot, horizontal = FALSE,
> box.width = .0001)
>
> Best,
> -Deepayan
>
> On Sat, Dec 10, 2022 at 7:46 PM Laurent Rhelp <LaurentRHelp at
free.fr>
> wrote:
> >
> > Dear R-Help list,
> >
> > I would like to use bwplot from the lattice package with a log
scale
> > both on
> > the x-axis and the y-axis but I do not know how to do that because I
do
> > not know
> > how to change the factor x-axis in a numeric x-axis.
> >
> > Here is my example:
> >
> >
> > library(lattice)
> >
> > # the mock data
> > y <- runif(100000,min=0, max=500)
> > x <- seq(0,500,length=length(y))
> > # I cut the x variable to create a factor variable in order to
calculate
> > the boxes
> > groups <- cut(x,10,ordered_result = TRUE)
> > # creating the dataframe for the lattice functions
> > DF <- data.frame( x= x , y = y, groups = groups)
> >
> >
> > ## ok for xyplot
> > xyplot( y ~ x
> > , data=DF
> > , scales = list(
> > y = list(log=T)
> > , x = list(log=T)
> >
> > )
> > )
> >
> > ## ok for bwplot with the log scale for the y-axis
> > bwplot( y ~ groups
> > , data=DF
> > , scales = list(
> > y = list(log=T)
> > # , x = list(log=T)
> >
> > )
> > )
> >
> >
> >
> > ## Non ok for bwplot with the log scale for the x-axis
> > bwplot( y ~ groups
> > , data=DF
> > , scales = list(
> > y = list(log=T)
> > , x = list(log=T)
> >
> > )
> > )
> > which gives an error because the x-axis is a factor, I would like to
> > replace it
> > for the display by the meddle of every class for example and put a log
> > scale on the x-axis.
> >
> > Thank you for your help
> > Best regards
> > Laurent
> >
> >
> >
> > --
> > Cet e-mail a ?t? v?rifi? par le logiciel antivirus d'Avast.
> > www.avast.com
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
Bert Gunter
2022-Dec-10 21:36 UTC
[R] lattice: how to use a log scale on the x-axis with the bwplot function
... and here's a version where the x variable is different than y. It's
basically the same.
set.seed(123)
y <- runif(40,min=0, max= 10)
x <- seq(0,10, length = 40)
## 5 equally spaced groups labeled by log10 of the center
## of the intervals
xrng <- range(x)
eps <- .0001*c(-1,1)*diff(xrng) ## see ?cut
xrng <-xrng + eps
delta <- diff(xrng)/5 # 5 = number of intervals
brks <- seq(xrng[1], xrng[2],length.out =6)
labs <- round(log10(brks[-1] - delta/2), 2) ## log10 (centers)
groups <- cut(x,breaks = brks, ordered_result = TRUE,
labels = paste0('10^',labs))
# creating the dataframe for the lattice functions
DF <- data.frame( y = y, groups = groups)
bwplot( y ~ groups
, data=DF
, scales = list(
y = list(log=T)
),
)
On Sat, Dec 10, 2022 at 10:20 AM Bert Gunter <bgunter.4567 at gmail.com>
wrote:
> If Deepayan's suggestion does not suit and especially *if* I understand
> what you want to do correctly, then it seems to me that it is
> straightforward to create the groups and group labels manually:
>
> ## in verbose detail to hopefully improve clarity
> set.seed(123) ## for reprex
> y <- runif(40,min=0, max= 10) ##*small* reprex
> ## cut y into 5 equally spaced groups labeled by log10 of the center
> ## of the intervals
> yrng <- range(y)
> eps <- .0001*c(-1,1)*diff(yrng) ## see ?cut
> yrng <-yrng + eps
> delta <- diff(yrng)/5 # 5 = number of intervals
> brks <- seq(yrng[1], yrng[2],length.out =6)
> labs <- round(log10(brks[-1] - delta/2), 2) ## log10 (centers)
> groups <- cut(y,breaks = brks,
> labels = paste0('10^',labs))
> # creating the dataframe for the lattice functions
> DF <- data.frame( y = y, groups = groups)
>
> bwplot( y ~ groups
> , data=DF
> , scales = list(
> y = list(log=T)
> ),
> )
>
> ## Of course, ignore if I have misunderstood.
>
> Cheers,
> Bert
>
> On Sat, Dec 10, 2022 at 8:03 AM Deepayan Sarkar <deepayan.sarkar at
gmail.com>
> wrote:
>
>> Log-scales for the "factor" variable in bwplot() is not
allowed.
>>
>> You could, however, use the panel function panel.bwplot() with
>> xyplot(num ~ num). The potential problem with that is the box widths,
>> which panel.bwplot() will not know how to compute.
>>
>> See if the following gives you a reasonable starting point:
>>
>> DF <- within(DF, m <- tapply(y, groups, mean))
>> xyplot(y ~ m, DF, scales = list(log = TRUE),
>> panel = panel.bwplot, horizontal = FALSE,
>> box.width = .0001)
>>
>> Best,
>> -Deepayan
>>
>> On Sat, Dec 10, 2022 at 7:46 PM Laurent Rhelp <LaurentRHelp at
free.fr>
>> wrote:
>> >
>> > Dear R-Help list,
>> >
>> > I would like to use bwplot from the lattice package with a log
scale
>> > both on
>> > the x-axis and the y-axis but I do not know how to do that because
I do
>> > not know
>> > how to change the factor x-axis in a numeric x-axis.
>> >
>> > Here is my example:
>> >
>> >
>> > library(lattice)
>> >
>> > # the mock data
>> > y <- runif(100000,min=0, max=500)
>> > x <- seq(0,500,length=length(y))
>> > # I cut the x variable to create a factor variable in order to
calculate
>> > the boxes
>> > groups <- cut(x,10,ordered_result = TRUE)
>> > # creating the dataframe for the lattice functions
>> > DF <- data.frame( x= x , y = y, groups = groups)
>> >
>> >
>> > ## ok for xyplot
>> > xyplot( y ~ x
>> > , data=DF
>> > , scales = list(
>> > y = list(log=T)
>> > , x = list(log=T)
>> >
>> > )
>> > )
>> >
>> > ## ok for bwplot with the log scale for the y-axis
>> > bwplot( y ~ groups
>> > , data=DF
>> > , scales = list(
>> > y = list(log=T)
>> > # , x = list(log=T)
>> >
>> > )
>> > )
>> >
>> >
>> >
>> > ## Non ok for bwplot with the log scale for the x-axis
>> > bwplot( y ~ groups
>> > , data=DF
>> > , scales = list(
>> > y = list(log=T)
>> > , x = list(log=T)
>> >
>> > )
>> > )
>> > which gives an error because the x-axis is a factor, I would like
to
>> > replace it
>> > for the display by the meddle of every class for example and put a
log
>> > scale on the x-axis.
>> >
>> > Thank you for your help
>> > Best regards
>> > Laurent
>> >
>> >
>> >
>> > --
>> > Cet e-mail a ?t? v?rifi? par le logiciel antivirus d'Avast.
>> > www.avast.com
>> >
>> > ______________________________________________
>> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
see
>> > https://stat.ethz.ch/mailman/listinfo/r-help
>> > PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> > and provide commented, minimal, self-contained, reproducible code.
>>
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
[[alternative HTML version deleted]]