Just curious does anyone know of a website that has data available in a format that R can download and analyze? ? Thanks Bernard McGarvey Director, Fort Myers Beach Lions Foundation, Inc. Retired (Lilly Engineering Fellow).
This works very well https://github.com/covid19datahub/COVID19 Cheers, Ben On Mon, May 4, 2020 at 2:32 PM Bernard McGarvey < mcgarvey.bernard at comcast.net> wrote:> Just curious does anyone know of a website that has data available in a > format that R can download and analyze? > > Thanks > > > Bernard McGarvey > > > Director, Fort Myers Beach Lions Foundation, Inc. > > > Retired (Lilly Engineering Fellow). > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Ben Tupper Bigelow Laboratory for Ocean Science East Boothbay, Maine http://www.bigelow.org/ https://eco.bigelow.org [[alternative HTML version deleted]]
On Mon, 4 May 2020 at 11:32, Bernard McGarvey <mcgarvey.bernard at comcast.net> wrote:> Just curious does anyone know of a website that has data available in a > format that R can download and analyze? >https://hd1-units.herokuapp.com/covid has a days parameter one can adjust to go back in time and a suffix parameter to obtain json, yml, or csv. -- H -- OpenPGP: https://sks-keyservers.net/pks/lookup?op=get&search=0xFEBAD7FFD041BBA1 If you wish to request my time, please do so using *bit.ly/hd1AppointmentRequest <http://bit.ly/hd1AppointmentRequest>*. Si vous voudrais faire connnaisance, allez a *bit.ly/hd1AppointmentRequest <http://bit.ly/hd1AppointmentRequest>*. <https://sks-keyservers.net/pks/lookup?op=get&search=0xFEBAD7FFD041BBA1>Sent from my mobile device Envoye de mon portable [[alternative HTML version deleted]]
Sure. COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University is available here: https://github.com/CSSEGISandData/COVID-19 All in csv fiormat.> On May 4, 2020, at 11:31 AM, Bernard McGarvey <mcgarvey.bernard at comcast.net> wrote: > > Just curious does anyone know of a website that has data available in a format that R can download and analyze? > > Thanks > > > Bernard McGarvey > > > Director, Fort Myers Beach Lions Foundation, Inc. > > > Retired (Lilly Engineering Fellow). > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >James Spottiswoode Applied Mathematics & Statistics (310) 270 6220 jamesspottiswoode Skype james at jsasoc.com [[alternative HTML version deleted]]
Thanks, i will take a look Bernard Sent from my iPhone so please excuse the spelling!"> On May 4, 2020, at 2:49 PM, James Spottiswoode <james at jsasoc.com> wrote: > > ?Sure. COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University is available here: > > https://github.com/CSSEGISandData/COVID-19 > > All in csv fiormat. > > >> On May 4, 2020, at 11:31 AM, Bernard McGarvey <mcgarvey.bernard at comcast.net> wrote: >> >> Just curious does anyone know of a website that has data available in a format that R can download and analyze? >> >> Thanks >> >> >> Bernard McGarvey >> >> >> Director, Fort Myers Beach Lions Foundation, Inc. >> >> >> Retired (Lilly Engineering Fellow). >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > James Spottiswoode > Applied Mathematics & Statistics > (310) 270 6220 > jamesspottiswoode Skype > james at jsasoc.com > > >[[alternative HTML version deleted]]
While we're on this topic... I was interested in testing hypotheses (plural) that acid base chemistry (blood H+/HCO3/PCO2) or closely-related metabolic processes could influence the rate of viral replication, possibly by having some sort of effect on the acidity of phagocytes, vesicles or other cellular/intracellular-level "host" environments. There appears to be a relationship between age and blood pH, with a possibility of a change point around retirement age. This could (being somewhat speculative) be related to the differences we see in mortality rates by age. However, I've got no idea how to test the second part of the hypotheses, that blood acidity (or any other metabolic process) could influence the acidity of phagocytes or vesicles. Suggestions welcome...
I don't know if this is useful of not.
But here's some dis-aggregated US data.
It's about 10 days old, and I need to improve the dis-aggregation algorithm.
------------------------------------------------------
age <- 0:80
rel.mort.rate <- c (0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
5.97119198173175e-14, 1.49279799543293e-12,
1.80329997848298e-11, 1.40323011570696e-10, 7.91302361419091e-10,
3.45021443896442e-09, 0.0000000121231319447505, 0.0000000353442018829079,
0.0000000874198628343878, 0.000000186810950489511, 0.000000350496608960251,
0.000000586292710567257, 0.00000088809586113832, 0.00000123828572996647,
0.00000161636339411418, 0.00000200770373248443, 0.00000240656741448015,
0.00000281336507897391, 0.00000323131179486445, 0.00000366643530132155,
0.00000412942874923419, 0.00000463520698193433, 0.00000519914074326175,
0.00000583299029582447, 0.00000654330938109396, 0.00000733211405261902,
0.00000819881232642656, 0.00000914397689953956, 0.0000101752369848173,
0.0000113121562971092, 0.0000125849353938131, 0.0000140250299768815,
0.0000156519020717643, 0.0000174632527695486, 0.000019434044086,
0.0000215255604245307, 0.0000237027683240887, 0.0000259554459399679,
0.0000283147468915187, 0.0000308551986409676, 0.0000336771894650306,
0.0000368753737436115, 0.0000405063605263262, 0.0000445688466005247,
0.0000490032796563514, 0.0000537118848883967, 0.0000585949512128272,
0.0000635935967055111, 0.0000687239859205501, 0.0000740884186923496,
0.0000798570919656766, 0.0000862259973389807, 0.0000933650267485426,
0.000101373734773254, 0.000110260898647345, 0.0001199575254273,
0.000130361177821875, 0.000141396704797265, 0.000153071840957868,
0.00016550903061107, 0.000178943792317475, 0.000193689554660746,
0.000210077052171998, 0.00022838282771009, 0.000248763951569319,
0.000271212123374848, 0.000295531695409173, 0.000321339382531619,
0.000348084036019435, 0.000375091815336575, 0.000401647747211891)
names (rel.mort.rate) <- age
options (scipen=4)
mar <- par ("mar")
mar [2] <- mar [2] + 1
p0 <- par (mar=mar)
barplot (rel.mort.rate [41:81], ylim = c (0, 0.0004), xlab="age",
ylab="relative mortality rate\n(ndeaths / npeople | age)")
par (p0)
Sorry if I'm joining a little bit late. I've put some related links and scripts together a few weeks ago. Then I stopped with this, because there is so much. The data format employed by John Hopkins CSSE was sort of a big surprise to me. An opposite approach was taken in Germany, that organized it as a big JSON trees. Fortunately, both can be "tidied" with R, and represent good didactic examples for our students. Here yet another repo linking to the data: https://github.com/tpetzoldt/covid Thomas On 04.05.2020 at 20:48 James Spottiswoode wrote:> Sure. COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University is available here: > > https://github.com/CSSEGISandData/COVID-19 > > All in csv fiormat. > > >> On May 4, 2020, at 11:31 AM, Bernard McGarvey <mcgarvey.bernard at comcast.net> wrote: >> >> Just curious does anyone know of a website that has data available in a format that R can download and analyze? >> >> Thanks >> >> >> Bernard McGarvey >> >> >> Director, Fort Myers Beach Lions Foundation, Inc. >> >> >> Retired (Lilly Engineering Fellow). >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > James Spottiswoode > Applied Mathematics & Statistics > (310) 270 6220 > jamesspottiswoode Skype > james at jsasoc.com > >