Michael Felt
2015-Dec-29 10:02 UTC
[Rd] R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
This seems to be a problem that goes back a long time - and I hope
someone who understands what tre is suppossed to be doing will look at this.
A short history of other people who have reported on this on different
versions of AIX. I shall only add that I get the same results on AIX 5.3
TL7, AIX 6.1 TL9 and AIX 7.1 TL3.
Basically, with settings that work for AIX and 32-bit - the only changes
being
-maix32 becomes -maix64
and
export OBJECT_MODE=32 becomes export OBJECT_MODE=64
Then to shorten the 'make' bla bla, first run just make, then
cd src/library/tools
make -s sysdata
http://article.gmane.org/gmane.comp.lang.r.devel/38817/match=package+tools+malformed
http://article.gmane.org/gmane.comp.lang.r.devel/36886/match=package+tools+malformed
http://article.gmane.org/gmane.comp.lang.r.devel/23372/match=package+tools+malformed
Date: 2010-01-25 06:55:41 GMT (5 years, 48 weeks, 1 day, 20 hours and 30
minutes ago)
To that, to get debug data, I have
* added -DTRE_DUGUG to src/extra/tre/Makefile # ALL_CFLAGS =
$(ALL_CFLAGS_LO) -DTRE_DEBUG
* rm src/extra/tre/tre-match-parallel.o
* find . -name \*.so -exec rm {} \;
* make
* cd src/library/tools
* make -s sysdata
Attached are the two script files of the screen output. The 32-bit one
is more verbose - and contains magically lines such as:
found match 3037fd14 (while "found" does not occur in the 64-bit
output)
root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]wc
/tmp/sysdata.??.*
4730 14123 139916 /tmp/sysdata.32.text
1312 3688 40528 /tmp/sysdata.64.text
6042 17811 180444 total
root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]grep -c found
/tmp/sysdata.??.*
/tmp/sysdata.32.text:19
/tmp/sysdata.64.text:0
Hope this brings us (or me), closer to a resolution to an old concern.
And, best wishes for the new year!
Michael
Michael Felt
2015-Dec-30 08:58 UTC
[Rd] R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
On 2015-12-29 11:02, Michael Felt wrote:> This seems to be a problem that goes back a long time - and I hope > someone who understands what tre is suppossed to be doing will look at > this. > > A short history of other people who have reported on this on different > versions of AIX. I shall only add that I get the same results on AIX > 5.3 TL7, AIX 6.1 TL9 and AIX 7.1 TL3. > > Basically, with settings that work for AIX and 32-bit - the only > changes being > -maix32 becomes -maix64 > and > export OBJECT_MODE=32 becomes export OBJECT_MODE=64 > > Then to shorten the 'make' bla bla, first run just make, then > > cd src/library/tools > make -s sysdata > > http://article.gmane.org/gmane.comp.lang.r.devel/38817/match=package+tools+malformed > > http://article.gmane.org/gmane.comp.lang.r.devel/36886/match=package+tools+malformed > > http://article.gmane.org/gmane.comp.lang.r.devel/23372/match=package+tools+malformed > Date: 2010-01-25 06:55:41 GMT (5 years, 48 weeks, 1 day, 20 hours and > 30 minutes ago) > > To that, to get debug data, I have > > * added -DTRE_DUGUG to src/extra/tre/Makefile # ALL_CFLAGS = > $(ALL_CFLAGS_LO) -DTRE_DEBUG > * rm src/extra/tre/tre-match-parallel.o > * find . -name \*.so -exec rm {} \; > * make > * cd src/library/tools > * make -s sysdata > > Attached are the two script files of the screen output. The 32-bit one > is more verbose - and contains magically lines such as: > found match 3037fd14 (while "found" does not occur in the 64-bit > output) > > root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]wc > /tmp/sysdata.??.* > 4730 14123 139916 /tmp/sysdata.32.text > 1312 3688 40528 /tmp/sysdata.64.text > 6042 17811 180444 total > > root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]grep -c > found /tmp/sysdata.??.* > /tmp/sysdata.32.text:19 > /tmp/sysdata.64.text:0 > > > Hope this brings us (or me), closer to a resolution to an old concern. > > And, best wishes for the new year! > > Michael > >Still hoping for someones curiosity/willingness. The differences show up in the first comparision that is made (of the string "3.2.3" it seems) - 32-bit is on the left, 64-bit on the right. Script command is started on Tue Dec 29 08:39:16 UTC 2015. | Script command is started on Tue Dec 29 08:39:56 UTC 2015. root at x069:[/data/prj/cran/32/R-aix-3.2.3/src/library/tools]make -s sysdata | root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]make -s sysdata installing 'sysdata.rda' | installing 'sysdata.rda' tre_tnfa_run_parallel, input type 1 | tre_tnfa_run_parallel, input type 1 length: -1 | length: -1 pos:chr/code | states and tags | pos:chr/code | states and tags -------------+------------------------------------------------ | -------------+------------------------------------------------ init > 30380200 3038014c 30380098 | init > 110cc3040 110cc2f28 110cc2e10 match end offset = -1 | match end offset = -1 tre_tnfa_run_parallel, input type 1 | tre_tnfa_run_parallel, input type 1 length: -1 | length: -1 pos:chr/code | states and tags | pos:chr/code | states and tags -------------+------------------------------------------------ | -------------+------------------------------------------------ init > 3037fb88 | init > 110cc3310 0: 3/00051 | 3037fb88/0:0 | 0: 3/00051 | 110cc3310/0:0 1: ./00046 | 3037fb88/0:0 | 1: ./00046 | 110cc3310/0:0 init > 3037fb88 | init > 110cc3310 1: ./00046 | 3037fb88/0:1 | 1: ./00046 | 110cc3310/0:1 2: 2/00050 | 3037fb88/0:1 | 2: 2/00050 | 110cc3310/0:1 assertion failed | assertion failed init > 3037fb88 | init > 110cc3310 2: 2/00050 | 3037fc18/0:1 3037fb88/0:2 | 2: 2/00050 | 110cc33f0/0:1 110cc3310/0:2 3: ./00046 | 3037fc18/0:1 3037fb88/0:2 | 3: ./00046 | 110cc33f0/0:1 110cc3310/0:2 assertion failed *** DIFFERENCE *** | init > 110cc3310 init > 3037fb88 | 3: ./00046 | 110cc3310/0:3 3: ./00046 | 3037fc18/0:1 3037fb88/0:3 | 4: 3/00051 | 110cc3310/0:3 4: 3/00051 | 3037fc18/0:1 3037fb88/0:3 | assertion failed assertion failed | init > 110cc3310 init > 3037fb88 | 4: 3/00051 | 110cc33f0/0:3 110cc3310/0:4 4: 3/00051 | 3037fc18/0:3 3037fb88/0:4 | 5: /00000 | 110cc33f0/0:3 110cc3310/0:4 5: /00000 | 3037fc18/0:3 3037fb88/0:4 | init > 110cc3310 found match 3037fd14 *** DIFFERENCE *** | match end offset = -1 match end offset = 5 *** DIFFERENCE *** | tre_tnfa_run_parallel, input type 1 tre_tnfa_run_parallel, input type 1 | length: -1 length: -1 | pos:chr/code | states and tags pos:chr/code | states and tags | -------------+------------------------------------------------ -------------+------------------------------------------------ | init > 110cc4780 110cc4668 110cc4550 init > 303811c0 3038110c 30381058 | match end offset = -1 match end offset = -1 | tre_tnfa_run_parallel, input type 1 tre_tnfa_run_parallel, input type 1 | length: -1 length: -1 | pos:chr/code | states and tags pos:chr/code | states and tags | -------------+------------------------------------------------ -------------+------------------------------------------------ | init > 110cc5700 110cc55e8 110cc54d0
Michael Felt
2015-Dec-31 15:14 UTC
[Rd] R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
On 2015-12-30 09:58, Michael Felt wrote:> On 2015-12-29 11:02, Michael Felt wrote: >> This seems to be a problem that goes back a long time - and I hope >> someone who understands what tre is suppossed to be doing will look >> at this. >> >> A short history of other people who have reported on this on >> different versions of AIX. I shall only add that I get the same >> results on AIX 5.3 TL7, AIX 6.1 TL9 and AIX 7.1 TL3. >> >> Basically, with settings that work for AIX and 32-bit - the only >> changes being >> -maix32 becomes -maix64 >> and >> export OBJECT_MODE=32 becomes export OBJECT_MODE=64 >> >> Then to shorten the 'make' bla bla, first run just make, then >> >> cd src/library/tools >> make -s sysdata >> >> http://article.gmane.org/gmane.comp.lang.r.devel/38817/match=package+tools+malformed >> >> http://article.gmane.org/gmane.comp.lang.r.devel/36886/match=package+tools+malformed >> >> http://article.gmane.org/gmane.comp.lang.r.devel/23372/match=package+tools+malformed >> Date: 2010-01-25 06:55:41 GMT (5 years, 48 weeks, 1 day, 20 hours and >> 30 minutes ago) >> >> To that, to get debug data, I have >> >> * added -DTRE_DUGUG to src/extra/tre/Makefile # ALL_CFLAGS = >> $(ALL_CFLAGS_LO) -DTRE_DEBUG >> * rm src/extra/tre/tre-match-parallel.o >> * find . -name \*.so -exec rm {} \; >> * make >> * cd src/library/tools >> * make -s sysdata >> >> Attached are the two script files of the screen output. The 32-bit >> one is more verbose - and contains magically lines such as: >> found match 3037fd14 (while "found" does not occur in the 64-bit >> output) >> >> root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]wc >> /tmp/sysdata.??.* >> 4730 14123 139916 /tmp/sysdata.32.text >> 1312 3688 40528 /tmp/sysdata.64.text >> 6042 17811 180444 total >> >> root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]grep -c >> found /tmp/sysdata.??.* >> /tmp/sysdata.32.text:19 >> /tmp/sysdata.64.text:0 >> >> >> Hope this brings us (or me), closer to a resolution to an old concern. >> >> And, best wishes for the new year! >> >> Michael >> >> > Still hoping for someones curiosity/willingness. > > The differences show up in the first comparision that is made (of the > string "3.2.3" it seems) - 32-bit is on the left, 64-bit on the right. > > Script command is started on Tue Dec 29 08:39:16 UTC > 2015. | Script command is started on Tue Dec 29 > 08:39:56 UTC 2015. > root at x069:[/data/prj/cran/32/R-aix-3.2.3/src/library/tools]make -s > sysdata | > root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]make -s > sysdata > installing > 'sysdata.rda' | > installing 'sysdata.rda' > tre_tnfa_run_parallel, input type > 1 | tre_tnfa_run_parallel, > input type 1 > length: > -1 > | length: -1 > pos:chr/code | states and > tags | pos:chr/code | > states and tags > -------------+------------------------------------------------ > | -------------+------------------------------------------------ > init > 30380200 3038014c > 30380098 | init > > 110cc3040 110cc2f28 110cc2e10 > match end offset = > -1 | match > end offset = -1 > tre_tnfa_run_parallel, input type > 1 | tre_tnfa_run_parallel, > input type 1 > length: > -1 > | length: -1 > pos:chr/code | states and > tags | pos:chr/code | > states and tags > -------------+------------------------------------------------ > | -------------+------------------------------------------------ > init > > 3037fb88 > | init > 110cc3310 > 0: 3/00051 | > 3037fb88/0:0 | > 0: 3/00051 | 110cc3310/0:0 > 1: ./00046 | > 3037fb88/0:0 | > 1: ./00046 | 110cc3310/0:0 > init > > 3037fb88 > | init > 110cc3310 > 1: ./00046 | > 3037fb88/0:1 | > 1: ./00046 | 110cc3310/0:1 > 2: 2/00050 | > 3037fb88/0:1 | > 2: 2/00050 | 110cc3310/0:1 > assertion > failed > | assertion failed > init > > 3037fb88 > | init > 110cc3310 > 2: 2/00050 | 3037fc18/0:1 > 3037fb88/0:2 | 2: 2/00050 | > 110cc33f0/0:1 110cc3310/0:2 > 3: ./00046 | 3037fc18/0:1 > 3037fb88/0:2 | 3: ./00046 | > 110cc33f0/0:1 110cc3310/0:2 > assertion failed *** DIFFERENCE > *** | init > 110cc3310 > init > > 3037fb88 > | 3: ./00046 | 110cc3310/0:3 > 3: ./00046 | 3037fc18/0:1 > 3037fb88/0:3 | 4: 3/00051 | > 110cc3310/0:3 > 4: 3/00051 | 3037fc18/0:1 > 3037fb88/0:3 | assertion failed > assertion > failed > | init > 110cc3310 > init > > 3037fb88 > | 4: 3/00051 | 110cc33f0/0:3 110cc3310/0:4 > 4: 3/00051 | 3037fc18/0:3 > 3037fb88/0:4 | 5: /00000 | > 110cc33f0/0:3 110cc3310/0:4 > 5: /00000 | 3037fc18/0:3 3037fb88/0:4 | init > 110cc3310 > found match 3037fd14 *** DIFFERENCE *** | match > end offset = -1 > match end offset = 5 *** DIFFERENCE *** | > tre_tnfa_run_parallel, input type 1 > tre_tnfa_run_parallel, input type > 1 | length: -1 > length: > -1 > | pos:chr/code | states and tags > pos:chr/code | states and > tags | > -------------+------------------------------------------------ > -------------+------------------------------------------------ > | init > 110cc4780 110cc4668 110cc4550 > init > 303811c0 3038110c > 30381058 | match end > offset = -1 > match end offset = > -1 | > tre_tnfa_run_parallel, input type 1 > tre_tnfa_run_parallel, input type > 1 | length: -1 > length: > -1 > | pos:chr/code | states and tags > pos:chr/code | states and > tags | > -------------+------------------------------------------------ > -------------+------------------------------------------------ > | init > 110cc5700 110cc55e8 110cc54d0 >One day further - looks like tre_compile (or just before, after all). With TRE_DEBUG switched on in tre-compile.c and tre-ast.c I see (snip) --- /tmp/x.32 2015-12-31 15:09:44.000000000 +0000 +++ /tmp/x.64 2015-12-31 15:09:30.000000000 +0000 @@ -1,5 +1,5 @@ - Script command is started on Thu Dec 31 15:04:39 2015. - root at x069:[/data/prj/cran/32/R-aix-3.2.3/src/library/tools]make sysdata + Script command is started on Thu Dec 31 15:08:43 2015. + root at x069:[/data/prj/cran/64/R-aix-3.2.3/src/library/tools]make sysdata installing 'sysdata.rda' echo "tools:::sysdata2LazyLoadDB(\"/data/prj/cran/R-3.2.3/src/library/tools/R/sysdata.rda\",\"../../../library/tools/R\")" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C ../../../bin/R --vanilla --slave @@ -167,7 +167,7 @@ initial: 1/1,0, assert 0 initial: 0/0, assert 0 initial: 0/0, assert 0 - final state 30370718 + final state 110cba530 tre_compile: parsing '(^|[^%])(%%)*%V' AST: catenation, sub 0, 0 tags @@ -177,7 +177,7 @@ assertions: bol union, sub -1, 0 tags literal (, $) (0, 36), pos 0, sub -1, 0 tags - literal (&, M-^?) (38, 65535), pos 0, sub -1, 0 tags + literal (&, M-^?) (38, -1), pos 0, sub -1, 0 tags iteration {0, -1}, sub -1, 0 tags, greedy catenation, sub 2, 0 tags literal (%, %) (37, 37), pos 1, sub -1, 0 tags @@ -197,7 +197,7 @@ Union Literal 0-36 After union left - Literal 38-65535 + Literal 38--1 After union right After union right num_tags += 2 @@ -231,7 +231,7 @@ assertions: bol union, sub -1, 0 tags literal (, $) (0, 36), pos 0, sub -1, 0 tags - literal (&, M-^?) (38, 65535), pos 0, sub -1, 0 tags + literal (&, M-^?) (38, -1), pos 0, sub -1, 0 tags iteration {0, -1}, sub -1, 2 tags, greedy catenation, sub 2, 1 tags literal (%, %) (37, 37), pos 1, sub -1, 1 tags @@ -255,7 +255,7 @@ Union Literal 0-36 After union left - Literal 38-65535 + Literal 38--1 After union right After union right tre_add_tag_right: tag 3 @@ -342,7 +342,7 @@ catenation, sub -1, 0 tags union, sub -1, 0 tags literal (, $) (0, 36), pos 0, sub -1, 0 tags - literal (&, M-^?) (38, 65535), pos 0, sub -1, 0 tags + literal (&, M-^?) (38, -1), pos 0, sub -1, 0 tags tag 4 It seems in 32-bit mode -1 is unsigned (65535) but -1 == -1 in 64-bit mode. I suspect I will "find it" - but a proposed change is appreciated. Happy New Year, Michael
Possibly Parallel Threads
- R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
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- R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
- R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"
- R, AIX 64-bit builds - trying to understand root cause for message: "Error: Line starting 'Package: tools ...' is malformed!"