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Sariya, Sanjeev

2018-Feb-01 15:18 UTC

[R] Error while working with png output on linux server

Thanks for pointing to FAQ: I tried with cairo (shared in commands),
unfortunately didn't work.

--
Sanjeev Sariya


-----Original Message-----
From: Jeff Newmiller [mailto:jdnewmil at dcn.davis.ca.us] 
Sent: Thursday, February 01, 2018 10:12 AM
To: r-help at r-project.org; Sariya, Sanjeev <ss5505 at
cumc.columbia.edu>; r-help at r-project.org
Subject: Re: [R] Error while working with png output on linux server

FAQ 7.19?

Also, read the Posting Guide, in particular about posting using plain text. 
--
Sent from my phone. Please excuse my brevity.

On February 1, 2018 6:50:42 AM PST, "Sariya, Sanjeev" <ss5505 at
cumc.columbia.edu> wrote:>I'm working on linux server:
>Linux  4.9.0-4-amd64 #1 SMP Debian 4.9.51-1 (2017-09-28) x86_64 
>GNU/Linux
>
>I get error while creating png files. I'm sharing my commands and error 
>while I run those commands:
>
>>png("abc", type="cairo")
>Error in .External2(C_X11, paste0("png::", filename), g$width, 
>g$height,  :
>  unable to start device PNG
>In addition: Warning message:
>In png("abc", type = "cairo") : unable to open
connection to X11
>display ''
>
>> png("apoeqqplot.png", res=600)
>Error in .External2(C_X11, paste0("png::", filename), g$width, 
>g$height,  :
>  unable to start device PNG
>In addition: Warning message:
>In png("apoeqqplot.png", res = 600) :
>  unable to open connection to X11 display ''
>
>dev.off()
>
>R version 3.4.2 (2017-09-28)
>Platform: x86_64-pc-linux-gnu (64-bit)
>Running under: Debian GNU/Linux 9 (stretch)
>
>Matrix products: default
>BLAS: /mnt/mfs/cluster/bin/R-3.4/lib/libRblas.so
>LAPACK: /mnt/mfs/cluster/bin/R-3.4/lib/libRlapack.so
>
>locale:
>[1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>[3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>[5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>[7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>[9] LC_ADDRESS=C               LC_TELEPHONE=C
>[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
>attached base packages:
>[1] stats     graphics  grDevices utils     datasets  methods   base
>
>other attached packages:
>[1] CMplot_3.3.1
>
>loaded via a namespace (and not attached):
>[1] compiler_3.4.2 tools_3.4.2
>
>
>How do I fix this?
>
>
>	[[alternative HTML version deleted]]
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see 
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

Thierry Onkelinx

2018-Feb-01 15:57 UTC

head link

[R] Error while working with png output on linux server

Dear Sanjeev,

It seems that you system neither supports X11 devices nor cairo
devices. See http://lmgtfy.com/?q=R+unable+to+open+connection+to+X11
for possible solutions.

Best regards,

ir. Thierry Onkelinx
Statisticus / Statistician

Vlaamse Overheid / Government of Flanders
INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE
AND FOREST
Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance
thierry.onkelinx at inbo.be
Havenlaan 88 bus 73, 1000 Brussel
www.inbo.be

///////////////////////////////////////////////////////////////////////////////////////////
To call in the statistician after the experiment is done may be no
more than asking him to perform a post-mortem examination: he may be
able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data. ~ Roger Brinner
The combination of some data and an aching desire for an answer does
not ensure that a reasonable answer can be extracted from a given body
of data. ~ John Tukey
///////////////////////////////////////////////////////////////////////////////////////////




2018-02-01 16:18 GMT+01:00 Sariya, Sanjeev <ss5505 at
cumc.columbia.edu>:> Thanks for pointing to FAQ: I tried with cairo (shared in commands),
unfortunately didn't work.
>
> --
> Sanjeev Sariya
>
>
> -----Original Message-----
> From: Jeff Newmiller [mailto:jdnewmil at dcn.davis.ca.us]
> Sent: Thursday, February 01, 2018 10:12 AM
> To: r-help at r-project.org; Sariya, Sanjeev <ss5505 at
cumc.columbia.edu>; r-help at r-project.org
> Subject: Re: [R] Error while working with png output on linux server
>
> FAQ 7.19?
>
> Also, read the Posting Guide, in particular about posting using plain text.
> --
> Sent from my phone. Please excuse my brevity.
>
> On February 1, 2018 6:50:42 AM PST, "Sariya, Sanjeev" <ss5505
at cumc.columbia.edu> wrote:
>>I'm working on linux server:
>>Linux  4.9.0-4-amd64 #1 SMP Debian 4.9.51-1 (2017-09-28) x86_64
>>GNU/Linux
>>
>>I get error while creating png files. I'm sharing my commands and
error
>>while I run those commands:
>>
>>>png("abc", type="cairo")
>>Error in .External2(C_X11, paste0("png::", filename), g$width,
>>g$height,  :
>>  unable to start device PNG
>>In addition: Warning message:
>>In png("abc", type = "cairo") : unable to open
connection to X11
>>display ''
>>
>>> png("apoeqqplot.png", res=600)
>>Error in .External2(C_X11, paste0("png::", filename), g$width,
>>g$height,  :
>>  unable to start device PNG
>>In addition: Warning message:
>>In png("apoeqqplot.png", res = 600) :
>>  unable to open connection to X11 display ''
>>
>>dev.off()
>>
>>R version 3.4.2 (2017-09-28)
>>Platform: x86_64-pc-linux-gnu (64-bit)
>>Running under: Debian GNU/Linux 9 (stretch)
>>
>>Matrix products: default
>>BLAS: /mnt/mfs/cluster/bin/R-3.4/lib/libRblas.so
>>LAPACK: /mnt/mfs/cluster/bin/R-3.4/lib/libRlapack.so
>>
>>locale:
>>[1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>[3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>[5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>[7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>>[9] LC_ADDRESS=C               LC_TELEPHONE=C
>>[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>>attached base packages:
>>[1] stats     graphics  grDevices utils     datasets  methods   base
>>
>>other attached packages:
>>[1] CMplot_3.3.1
>>
>>loaded via a namespace (and not attached):
>>[1] compiler_3.4.2 tools_3.4.2
>>
>>
>>How do I fix this?
>>
>>
>>       [[alternative HTML version deleted]]
>>
>>______________________________________________
>>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>https://stat.ethz.ch/mailman/listinfo/r-help
>>PLEASE do read the posting guide
>>http://www.R-project.org/posting-guide.html
>>and provide commented, minimal, self-contained, reproducible code.
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

Sariya, Sanjeev

2018-Feb-01 16:23 UTC

head link

[R] Error while working with png output on linux server

Thanks for your reply. I searched for the error on Google before resorting to
the R forum (help group).
I tried Sys.env(...) too, but didn't resolve the error I get. Hence I am
looking for solution.


 
--


-----Original Message-----
From: Thierry Onkelinx [mailto:thierry.onkelinx at inbo.be] 
Sent: Thursday, February 01, 2018 10:57 AM
To: Sariya, Sanjeev <ss5505 at cumc.columbia.edu>
Cc: Jeff Newmiller <jdnewmil at dcn.davis.ca.us>; r-help at r-project.org
Subject: Re: [R] Error while working with png output on linux server

Dear Sanjeev,

It seems that you system neither supports X11 devices nor cairo devices. See
http://lmgtfy.com/?q=R+unable+to+open+connection+to+X11
for possible solutions.

Best regards,

ir. Thierry Onkelinx
Statisticus / Statistician

Vlaamse Overheid / Government of Flanders INSTITUUT VOOR NATUUR- EN BOSONDERZOEK
/ RESEARCH INSTITUTE FOR NATURE AND FOREST Team Biometrie & Kwaliteitszorg /
Team Biometrics & Quality Assurance thierry.onkelinx at inbo.be Havenlaan 88
bus 73, 1000 Brussel www.inbo.be

///////////////////////////////////////////////////////////////////////////////////////////
To call in the statistician after the experiment is done may be no more than
asking him to perform a post-mortem examination: he may be able to say what the
experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not
data. ~ Roger Brinner The combination of some data and an aching desire for an
answer does not ensure that a reasonable answer can be extracted from a given
body of data. ~ John Tukey
///////////////////////////////////////////////////////////////////////////////////////////




2018-02-01 16:18 GMT+01:00 Sariya, Sanjeev <ss5505 at
cumc.columbia.edu>:> Thanks for pointing to FAQ: I tried with cairo (shared in commands),
unfortunately didn't work.
>
> --
> Sanjeev Sariya
>
>
> -----Original Message-----
> From: Jeff Newmiller [mailto:jdnewmil at dcn.davis.ca.us]
> Sent: Thursday, February 01, 2018 10:12 AM
> To: r-help at r-project.org; Sariya, Sanjeev <ss5505 at
cumc.columbia.edu>;
> r-help at r-project.org
> Subject: Re: [R] Error while working with png output on linux server
>
> FAQ 7.19?
>
> Also, read the Posting Guide, in particular about posting using plain text.
> --
> Sent from my phone. Please excuse my brevity.
>
> On February 1, 2018 6:50:42 AM PST, "Sariya, Sanjeev" <ss5505
at cumc.columbia.edu> wrote:
>>I'm working on linux server:
>>Linux  4.9.0-4-amd64 #1 SMP Debian 4.9.51-1 (2017-09-28) x86_64 
>>GNU/Linux
>>
>>I get error while creating png files. I'm sharing my commands and 
>>error while I run those commands:
>>
>>>png("abc", type="cairo")
>>Error in .External2(C_X11, paste0("png::", filename), g$width,
>>g$height,  :
>>  unable to start device PNG
>>In addition: Warning message:
>>In png("abc", type = "cairo") : unable to open
connection to X11
>>display ''
>>
>>> png("apoeqqplot.png", res=600)
>>Error in .External2(C_X11, paste0("png::", filename), g$width,
>>g$height,  :
>>  unable to start device PNG
>>In addition: Warning message:
>>In png("apoeqqplot.png", res = 600) :
>>  unable to open connection to X11 display ''
>>
>>dev.off()
>>
>>R version 3.4.2 (2017-09-28)
>>Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux 
>>9 (stretch)
>>
>>Matrix products: default
>>BLAS: /mnt/mfs/cluster/bin/R-3.4/lib/libRblas.so
>>LAPACK: /mnt/mfs/cluster/bin/R-3.4/lib/libRlapack.so
>>
>>locale:
>>[1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>>[3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>>[5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>>[7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>>[9] LC_ADDRESS=C               LC_TELEPHONE=C
>>[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>>attached base packages:
>>[1] stats     graphics  grDevices utils     datasets  methods   base
>>
>>other attached packages:
>>[1] CMplot_3.3.1
>>
>>loaded via a namespace (and not attached):
>>[1] compiler_3.4.2 tools_3.4.2
>>
>>
>>How do I fix this?
>>
>>
>>       [[alternative HTML version deleted]]
>>
>>______________________________________________
>>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see 
>>https://stat.ethz.ch/mailman/listinfo/r-help
>>PLEASE do read the posting guide
>>http://www.R-project.org/posting-guide.html
>>and provide commented, minimal, self-contained, reproducible code.
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see 
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide 
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

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