Displaying 20 results from an estimated 2000 matches similar to: "How to connect R and WinBUGS/OpenBUGS/LinBUGS in Linux in Feb. 2009"
2006 Apr 29
3
Making R talk to Win/OpenBUGS in Linux (again)
I'm back!
I've just learned that, on a fully updated Fedora Core Linux5 sytem,
the working solution to access Winbugs under wine via the R package
"rbugs" no longer works. Here was my last post on this topic (with
the formerly working solution) from January.
http://finzi.psych.upenn.edu/R/Rhelp02a/archive/68497.html
Currently, what happens is that WinBUGS starts up, but just
2006 Jan 16
3
Current state of support for BUGS access for Linux users?
Greetings:
I'm going to encourage some students to try Bayesian ideas for
hierarchical models.
I want to run the WinBUGS and R examples in Tony Lancaster's An
Introduction to Modern Bayesian Econometrics. That features MS
Windows and "bugs" from R2WinBUGS.
Today, I want to ask how people are doing this in Linux? I have found
a plethora of possibilities, some of which are not
2011 Oct 20
1
Are they fully identical: WinBUGS and OpenBUGS; R2WinBUGS and R2OpenBUGS
Hello ALL!
I am running Linux, Fedora 15 64-bits, and R on it. I need to use
WinBUGS and R2WinBUGS, but as far as I read, WinBUGS is closed project,
to be continued with/as OpenBUGS. Thus, I have found R2OpenBUGS on
OpenBUGS Contributed Code (http://openbugs.info/w/UserContributedCode),
not on CRAN. Author(s) states that it is equivalent for R2WinBUGS. I
tried briefly, and realized few minor
2009 Oct 06
2
R, Coda, and OpenBUGS
Hi All,
I am trying to figure out how to use R-Coda with the output from
OpenBugs. I have installed and loaded the packages BRugs and R2WinBUGS.
I have successfully run a simple Bayes model in WinBUGS using R2WinBUGS'
"bugs" and have used "read.bugs" to build the coda object. I can
successfully switch to OpenBugs and run the same model and get the basic
summary
2008 Jun 10
1
Bayesina Analysis using the BUGS Language
Hi all,
I observed that the 'link' between R and BUGS (winBugs/linBugs) has
totally disappeared. I'm wondering what package can be use to run
bayesian models specified using the BUGS language in R (specifically
under Linux). Is there any other option besides JAGS ?
Thanks
-----------------------------------------
Stay ahead of the information curve.
Receive EDA news and jobs on
2010 May 17
1
BRugs under Linux?
Hello.
In this post:
http://finzi.psych.upenn.edu/Rhelp10/2010-March/233815.html
Uwe Ligges suggests using BRugs rather than R2WinBUGS under windows. He
also notes that it is not in the main CRAN repository, but it is in
"extras" which is a default repository under windows.
I have OpenBUGS 3.1.0 (the latest that has a native Linux version which
is no longer called linBUGS)
2007 Nov 23
2
R2winBUGS & WinBUGS gui
I am trying to figure out if it is possible to run winBUGS from within
R, using R2winBUGS, without having winBUGS spawn any windows (basically
- 'true' batch - no GUI actions at all). The reason being I have a
machine which I (and several others) ssh/telnet into, and would like to
run winBUGS without having to mount a virtual desktop of any kind.
I've looked through the r2winBUGS
2009 Oct 07
1
Which JAGS interface to use?
Frank (or anyone else), can you offer any comments comparing runjags,
R2jags, rjags ?
I couldn't find any vignettes, nothing except a brief mention on Task Views.
Kevin
On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu
> wrote:
> Have you tried the rjags package which uses the jags system? It is much
> more integrated into R and works quite well.
2009 Jul 07
1
R2WinBUGS under Linux/WINE fails
Hi,
I'm running wine-1.0.1, OpenBUGS 3.0.3, R 2.9.0, and R2WinBUGS on a Redhat
Enterprise Linux machine.
Following various peoples' suggestions...
This works perfectly (yay!): wine Z:/opt/OpenBUGS/winbugs.exe
Within R, however, I get this:
(setup the example from ?bugs, then....)
R> schools.sim <- bugs(data, inits, parameters, model.file, n.chains=3,
2010 May 06
1
BRugs dwwinn.exe error
Hi,
I have a strange behaviour of openBUGS and WinBUGS when I start them
from R.
Version:
R: 2.10.1
openBUGS: 3.07
WinBUGS: 1.43
R2WinBUGS: 2.1-16
BRugs: 0.5-3
I have a model and data without initial start values. If I use the stand
alone versions of openBUGS and WinBUGS I don't have any problems and I
get what I want.
If I use function bugs() from R2WinBUGS- resp. BRugs-Library then
2008 Jan 20
3
Bugs through R in Mac
Hello,
I recently changed from Win XP to Mac OS X (10.5.1).
Is there a way to run Bugs (in any version) in R (R version 2.6.0
(2007-10-03)) on this platform?
Fredrik
2008 Dec 31
3
WinBUGS posterior samples (via R2WinBUGS)?
Hi all,
I did some analysis using package R2WinBUGS to call WinBUGS. I set the
iterations to 50000 (fairly a large number, I think), but after the program
was done, the effective posterior samples contained only 7 draws. I don't
know why.
By the way, I checked posterior sample size by using bugsobj$n.sims. And,
for my previous practice with WinBUGS/R2WinBUGS, no such strange thing
happend.
2009 Nov 03
2
R2WinBUGS not working?
This weekend I noticed that my R2WinBUGS connection was no longer working on
my Windows computer at work AND my Ubuntu linux computer at home. As soon
as WinBUGS opens, the message reads Index Out Of Range. I have un-installed
and re-installed R on both computers and the problem remains the same. At
first I thought it was the new version of R, but I was able to overcome the
problem (on Windows
2007 Aug 06
2
Makefile for embedding OpenBUGS in R package
Dear list,
I'm trying to embed OpenBUGS in an R package for use of it
on 64-bit Linux. In order to get the CLI working one has to
compile C code contained in $OpenBUGS/Manuals/CBugs.html
(copied to say CBugs.c) using
gcc -m32 -o bugs CBugs.c -ldl
I put the OpenBUGS distribution in the ./inst subdirectory of
the package root. Where should I now put the CBugs.c and how
2011 Jan 13
1
Openbugs and rbugs on mac with wine
Hello list,
I?ve been trying to get OpenBUGS running on my mac using the wine
emulator. I can run Openbugs just fine by doing:
wine ~/OpenBUGS312/OpenBUGS.exe
In the terminal, so OpenBUGS works. When I try to run the schools
example using rbugs(), the OpenBUGS process starts in wine, but it
just sits there, no log, no script, no output of any sort. The rbugs
() call makes the init,
2012 Feb 23
2
help with winbugs glm
Hi,
I am running a model with count data and one categorical predictor (simple
model for me to understand it fully), I did in R a glm like this:
glm(Recruitment~Depth, family=poisson). I get the coefficientes and
confidence intervals and all is ok. But then I want to do the same model
with Bayesian stats, here is my code:
model
{ for (i in 1:232)
{
Recruitment[i]~dpois(lambda[i])
2008 Feb 15
1
question about calling winbugs in R
Dear All:
Do you have any experience on calling winbugs in R enviorment? I uploaded R2winbgus, pktools, BRugs, ect. in order to call winbugs. In the end, I try to use bugs(). The error message still displays that bugs() can not find.
Do you have any similar issue? If so, could you give your advice?
Many Thanks!
Xin
[[alternative HTML version deleted]]
2009 Jan 12
2
R2WinBUGS stopping execution
Apologies if this isn't acceptable for the general help list.
I'm running OpenBUGS model via the R2WinBUGS package interface, under
Windows. Is it possible to terminate running models, short of using the
Windows Task Manager to forcibly exit the program?
Regards,
Richie.
Mathematical Sciences Unit
HSL
------------------------------------------------------------------------
2006 Dec 07
2
Enhances, require() and quality control
Hello!
I am working on a package where Enhances field seems to be a plausible
option. When I add package, say coda, to this field, I get the following
warning with recent R-devel:
----
* checking for working latex ... OK
* using log directory '/home/ggorjan/programs/R/devel/test.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-06 r40129)
* checking for file
2009 Apr 02
3
WinBUGS breaks under WINE > 1.1.12
Dear Wine-friends,
I was wondering if any of you would have a clue around why WinBUGS (http://www.mrc-bsu.cam.ac.uk/bugs/), a nifty Markov chain Monte Carlo sampler widely used in Bayesian statistical modelling, no longer works when run through any version of WINE newer than 1.1.12.
I have encountered this issue of my machines at home (which runs on Zenwalk 6.0) and work (Mandriva 2008.1) a