similar to: Problem installing R on openSUSE 10.3

Dear All, It is not a typical R question (though I use R for this) but I thought someone will help me. For the list of P values, I have calculated FDR using p.adjust() in R (bioconductor). But my FDR values are same for all the P values. When do we get same FDR values? Does the smallest P values should less than 1/N? (where N is the number of P values) Thanks in advance. Kind regards, Ezhil

Dear All, I have large matrix (46000 x 11250). I would like to do the linear regression for each row. I wrote a simple function that has lm() and used apply(mat,1,func). The issue is that it takes ages to load the file and also to finish the lm. I am using LINUX 64 bit with 32G mem. Is there an elegant and fast way of completing this task? Thanks in advance. Kind regards, Ezhil

Dear list, I cannot load the tcltk library: > library(tcltk) Loading Tcl/Tk interface ... Error in fun(...) : Can't find a usable tk.tcl in the following directories: /usr/share/tcltk/tcl8.4/tk8.4 ./lib/tk8.4 /usr/local/lib/tcltk/tk8.4 /usr/local/share/tcltk/tk8.4 /usr/lib/tcltk/tk8.4 /usr/share/tcltk/tk8.4 ./library ./tk8.4.16/library This probably means that tk wasn't

Dear All, I am using the following commands to do the scatter plot of two vectors, say X and Y. plot(X,Y, col="blue") abline(a=1,b=1, col="red") abline(a=-1,b=1, col="green") I would like to split the scatter plot into 3 part with 3 different colors: (i) points lies between 2 lines, (ii) points above line 1, and (iii) points below line 2. I am struggling to do

Dear All, How can I store hist() or any plot output graphics in PNG format? I tried with bitmap() but not getting the result. Appreciate your help on fixing this. Thanks in Advance. Regrads, Ezhil

Dear All, I have a correlation matrix of size 100 x 100 and would like to extract the diagonal matrix from it. I have used the for loop to store tha correlation values of the diagonal matrix. Is there a 'R way' of doing this? Thanks in advance. Kind regards, Ezhil

Hi, make check fails in the way shown below when I try to build R-2.6.2 on OpenSuSE Factory x86_64. It builds fine on i586. (and on all older Versions of Opensuse) Is there something I can do? Are there known problems with some gcc versions? (Factory uses 4.3.0) Output from ./configure is ------------------------------------------------------------- R is now configured for

Dear All, I have a matrix of size 10000 x 50. I would like to calculate all possible pair-wise correlation coefficient (5x10^7 combinations) using cor(). How can I efficiently calcualte and save the result in a matrix? Thanks in advance. Kind regards, Ezhil

Dear All, I have matrix (50000 X 60) of subjects and their responses to a set of questions. All responses are classified into categories (500). I would like to average all subject's responses for each category. I wrote a code using a for loop but is not working. Could please tell me what's wrong with the code? I guess, there is a elegant R way of doing the same thing. Thanks in advance.

Dear all, I am having a data for 2 different treatments with different time points. So, I used the following code to plot the boxplot and also to do anova. T11 <- c(280, 336, 249, 277, 429) T12 <- c(400, 397, 285, 407, 313) T13 <- c(725, 373, 364, 706, 249) T21 <- c(589, 257, 466, 248, 913) T22 <- c(519, 424, 512, 298, 907) T23 <- c(529, 479, 634, 354, 1015) obs <- c(T11,

Hello! thank you for your efforts creating R! While preparing the next lessons I found that I had to multiply with 1/length(x) by hand if I want to get the inverse Fouriertransform. The help states it will do it by itself. Version R-0.60.1, Linux Seems to be pretty easy to correct either the fft or :-) the help(fft)! Cu Detlef Detlef Steuer Universitaet Dortmund ///////

Hi, I have a matrix HR(9x27). I would like to make a single vector with elements: t(HR[,1]) followed by t(HR[,2]) and then t(HR[,3] ... etc. Is there any neat way of converting this matrix into a vector rather doing something like c(t(HR[,1]), t(HR[,2]), t(HR[,3]) ..)? Thanks in Advance. Kind regards, Ezhil ____________________________________________________________________________________

Hello! Help! How to create subscripts in text() ? Could not find an example nor could I guess it. Thank you! Detlef Detlef Steuer Universitaet Dortmund /////// LS Computergestuetzte Statistik U N I D O /// steuer at gigamain.statistik.uni-dortmund.de ______/////// Tel: ++49 +231 755 4353 Fax: ++49 +231 755 4387

I'm trying to get R and ESS to work with Xemacs on a newly installed SuSE 9.0 system. Is some setup required beyond installing the rpms? I've installed the Xemacs packages from SuSE xemacs-info-21.4.13-35 xemacs-packages-el-20030629-37 xemacs-21.4.13-35 xemacs-el-21.4.13-35 xemacs-packages-info-20030629-37 xemacs-packages-20030629-37 ess-5.2.0beta3-1.i586.rpm

On 03/04/2023 14:07, Detlef Steuer wrote: > Hi! > > The same Inar reported for rawhide > (https://stat.ethz.ch/pipermail/r-devel/2023-March/082482.html) > is true for SuSE's distros. > > Right now R does not compile with libcurl8, but SuSE Tumbleweed/Factory > switched to 8 a week ago. > > Would be great, if the patch Inar provided could be applied to >

Dear All, I have two matrices A (40 x 732) and B (40 x 1230) and would like to calculate correlation between them.  I can use: cor(A,B, method="pearson") to calculate correlation between all possible pairs. But the issue is that there is one-many specific mappings between A and B and I just need to calculate correlations for those pairs (not all). Some variables in A (proteins, say p1)

Hi! The same Inar reported for rawhide (https://stat.ethz.ch/pipermail/r-devel/2023-March/082482.html) is true for SuSE's distros. Right now R does not compile with libcurl8, but SuSE Tumbleweed/Factory switched to 8 a week ago. Would be great, if the patch Inar provided could be applied to main. Detlef -- "Wozu leben wir, wenn nicht dazu, uns gegenseitig das Leben einfacher zu

Dear list, there seems to be a problem with the standard location of R?s 64-bit libs at least under openSUSE. I had two user questions regarding the compilation of rpy2 for 64-bit systems. Personally I don`t know rpy2 but maybe someone on this list can decide if the mistake lies on R`s side or on rpy2?s side or in between. R-devel is installed in these cases, I asked. Latest R-base or

Am Mon, 3 Apr 2023 15:13:58 +0100 schrieb Prof Brian Ripley <ripley at stats.ox.ac.uk>: > On 03/04/2023 14:07, Detlef Steuer wrote: > > Hi! > > > > The same Inar reported for rawhide > > (https://stat.ethz.ch/pipermail/r-devel/2023-March/082482.html) > > is true for SuSE's distros. > > > > Right now R does not compile with libcurl8, but

Dear R-help, I have started using R on my Linux box (Debian), and I have some problems with setting the editor/keyboard for R. The For instance, arrow-up gives "^[[A", and delete gives "^H". I have a Norwegian keyboard, but that doesn't cause any problems for editors like emacs. Could you advice me on how I can set the editor for R right? I have tried