Displaying 20 results from an estimated 600 matches similar to: "R-About PLSR"
2007 Jul 06
1
about R, RMSEP, R2, PCR
Hi,
I want to calculate PLS package in R. Now I want to calculate R, MSEP,
RMSEP and R2 of PLSR and PCR using this.
I also add this in library of R. How I can calculate R, MSEP, RMSEP and R2
of PLSR and PCR in R.
I s any other method then please also suggest me. Simply I want to
calculate these value.
Thanking you.
--
Nitish Kumar Mishra
Junior Research Fellow
BIC, IMTECH, Chandigarh, India
2005 May 12
1
pls -- crossval vs plsr(..., CV=TRUE)
Hi,
Newbie question about the pls package.
Setup:
Mac OS 10.3.9
R: Aqua GUI 1.01, v 2.0.1
I want to get R^2 and Q^2 (LOO and Leave-10-Out) values for each
component for my model.
I was running into a few problems so I played with the example a little
and the results do not match up with the comments
in the help pages.
$ library(pls)
$ data(NIR)
$ testing.plsNOCV <- plsr(y ~ X, 6, data =
2007 Apr 17
1
About PLR
Hello Sir/Mam
I am Nitish Kumar Mishra from IMTECH, Chandigarh, India. I want to
calculate the Principal Component Analysis(PCA), PLS of the input file and
find top 30 PCAs of this file using PLS in R. I am asking regarding
Linux(Red Hat 9) operating system.
I have downloaded PLS from Crains site and try to installed it, but don't
installed it.
How I can download and installed PLS(for PCA and
2007 Apr 18
0
Help me about MADE4
Hi,
Help me, how I can Install made4(micoarray analysis tool) in R using linux
OS.
thanking you.
--
Nitish Kumar Mishra
Junior Research Fellow
BIC, IMTECH, Chandigarh, India
E-Mail Address:
nitish_km at yahoo.com
nitish at imtech.res.in
2007 Jul 04
0
About dataset
Hi R hep group member,
I want to know that how I can call my data in R for princomp function.
I want to calculate PCA of 200 descriptors of 4000 molecule(I am using
Linux). How I can call this in R.
Thanking you.
--
Nitish Kumar Mishra
Junior Research Fellow
BIC, IMTECH, Chandigarh, India
E-Mail Address:
nitish_km at yahoo.com
nitish at imtech.res.in
2017 Dec 05
2
PLS in R
Hello, I need help with a partial least square regression in R. I have read
both the vignette and the post on R bloggers but it is hard to figure out
how to do it. Here is the script I wrote:
library(pls)
plsrcue<- plsr(cue~fb+cn+n+ph+fung+bact+resp, data = cue, ncomp=7,
na.action = NULL, method = "kernelpls", scale=FALSE, validation = "LOO",
model = TRUE, x = FALSE, y =
2007 Oct 16
1
data structure for plsr
All,
I am working with NIR spectral data and it was great to find that the example in ?plsr also used spectral data. Unfortunately, I am having difficulty figuring out how the "yarn" dataset is structured to allow for the plsr model to read:
library(pls)
data(yard)
yarn.oscorespls <- mvr(density ~ NIR, 6, data = yarn, validation = "CV", method = "oscorespls")
2013 Jul 13
1
Alternative to eval(cl, parent.frame()) ?
Dear developeRs,
I maintain a package 'pls', which has a main fit function mvr(), and
functions plsr() and pcr() which are meant to take the same arguments as
mvr() and do exactly the same, but have different default values for the
'method' argument. The three functions are all exported from the name
space.
In the 'pre namespace' era, I took inspiration from lm() and
2011 Oct 21
1
use of segments in PLS
How to use the segments in the PLS
fit1 <- mvr(formula=Y~X1+X2+X3+X4+x5+....+x27, data=Dataset, comp=5,segment
=7 )
here when i use segments,the error was like this
rror in mvrCv(X, Y, ncomp, method = method, scale = sdscale, ...) :
argument 7 matches multiple formal arguments
Please help
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2005 Aug 27
1
PLSR: model notation and reliabilities
I'm new in both R and statistics. I "did my homework",
I tried the archives and whatever I managed to get
from the sources, but still I need assistance with
the plsr package.
I have a model with 2 core determinants D1 and D2,
made by 3 indicators each (D1a,D1b,D1c and so on).
Also I have 2 moderating variables (m1,m2), where
m1 moderates D1 and m2 modarates D2.
The dependent
2012 Mar 06
1
PLS Error message
Hi,
I work with hyperspectral remote sensing data and I try to built a pls
model with this data. I already built the model but if I try to
calculate the RMSEP and R2 with a test data set I get the following
error message:
Error: variable 'subX' was fitted with type "nmatrix.501" but type
"nmatrix.73" was supplied
The problem is that I don't get the message for
2005 Sep 04
2
Help: PLSR
Hello,
I have a data set with 15 variables (first one is the response) and
1200 observations. Now I use pls package to do the plsr as below.
trainSet = as.data.frame(scale(trainSet, center = T, scale = T))
trainSet.plsr = mvr(formula, ncomp = 14, data = trainSet, method = "kernelpls",
model = TRUE, x = TRUE, y = TRUE)
from the model, I wish to know the
2011 Dec 01
1
question about plsr() results
Hi,
With some help I learned how to use plsr(Y~x, 2, data=my) function in R (and build "my" from vector "Y" and matrix "x").
But still I have question about results interpretation. In the end I want to construct prediction function in form:
Y=a1x1+a2x2
But I do not understand how to do it. Documentation do not describe this.
Thanks for help. ;)
[[alternative HTML
2011 Oct 21
1
R square and F - stats in PLS
In the lm function the summary(lmobject) we have adjusted.r square and f
statistics
Do we have similar to the pls package and how to get it
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2011 May 12
1
Fw: Help with PLSR
Hi
I am attempting to use plsr which is part of the pls package in r. I
amconducting analysis on datasets to identify which proteins/peptides are
responsible for the variance between sample groups (Biomarker Spoting) in a
multivariate fashion.
I have a dataset in R called "FullDataListTrans". as you can see below the
structure of the data is 40 different rows representing a
2011 May 17
1
Help with PLSR with jack knife
Hi
I am analysing a dataset of 40 samples each with 90,000 intensity measures for
various peptides. I am trying to identify the Biomarkers (i.e. most significant
peptides). I beleive that PLS with jack knifing, or alternativeley
CMV(cross-model-validation) are multivariateThe 40 samples belong to four
different groups.
I have managed to conduct the plsr using the commands:
BHPLS1 <-
2009 May 07
1
I need your help about plsr
Hi, I need your help, so I send letter to you.
I have a problem about plsr in pls package. I want to show how classfied or
related each ohter samples, so I tried to use plsr and biplot.
But, I failed. Because, I had to change data type of my sample.
Unfortunately, I didn't know how change data type.
I want you to help me about that.
please, help me.
I show you my sample data , my scripts
2011 May 13
1
PLSR error
Hi,
this is my R-Script
library(pls)
file <- "C:\\TXT\\brix.txt"
d <- as.matrix(read.table(file, header=T, sep=",", row.names = NULL))
plsdata <- data.frame(NIR=c(1:nrow(X)))
plsdata$NIR <- I(d[,3:603])
plsdata$Brix <- d[,2]
results <- plsr(Brix ~ NIR, data=plsdata)
after the last string i have this error
> results <- plsr(Brix ~ NIR, data=plsdata)
2011 Oct 18
1
getting p-value and standard error in PLS
Hi
How to get p-value and the standard error in PLS
I have used the following function to calculate PLS
fit1 <- mvr(formula=Y~X1+X2+X3+X4, data=Dataset, comp=4)
Please help me
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2012 Oct 04
1
data structure for plsr
I am having a similar problem understanding the data structure of the
"yarn" dataset described in the "[R] data structure for plsr" posts. I have
spectroscopic data I'd like to run through a PLSR and have read the
tutorial series, but still do not understand the data format required for
the code to process my data. My current data structure consists of a .csv
file read into