Displaying 20 results from an estimated 700 matches similar to: "Building R for Windows with ATLAS"
2006 Sep 27
1
Building R-2.3.1 for Windows with ATLAS
Ok, moved to R-devel.
I tried to build R-2.3.1. Since I intent to distribute this tuned R to
all other who have a computer like mine here at work I thought it was
best to stay with the latest stable release.
About your suggestion, I could'n find xerblas.o file. And I don't know
how to edit libf77blas.a. I tried to open it with VIM
(http://vim.sf.net/) but there was a lot of strange
2006 Jan 13
1
Problems installing R 2.2.1
We are trying to install R2.2.1 on a IBM P655 Cluster, SuSE LE 9.1
We are using gcc v 3.3.3
and we are getting this error on make
g77 -fPIC -g -O2 -ffloat-store -c dlamc.f -o dlamc.lo
g77 -fPIC -g -O2 -c dlapack0.f -o dlapack0.lo
g77 -fPIC -g -O2 -c dlapack1.f -o dlapack1.lo
g77 -fPIC -g -O2 -c dlapack2.f -o dlapack2.lo
g77 -fPIC -g -O2 -c dlapack3.f -o dlapack3.lo
g77 -fPIC -g
2005 Sep 02
0
Build R with ATLAS
Hi,
I followed this message,
https://stat.ethz.ch/pipermail/r-devel/2004-February/028942.html, to
compile ATLAS with gcc and g77 on AMD Opteron. I then followed the
instructions on this message,
https://stat.ethz.ch/pipermail/r-devel/2004-February/028966.html, to
convert static libraries to dynamic libraries.
However, when I tried to configure R-devel, I got the following error
2012 May 09
2
R Installation Manual - ATLAS BLAS guidance that is not in the current version
Good afternoon.
I am trying to compile a version of Rblas.dll based on ATLAS for the Corei7. I had remembered that there was mention of which file to adjust and that "xerbla" needed to be removed from one of the outputs from the last time I tried a few years ago. The most recent version of the R Installation manual does not say anything about this. An older version (2.10 I believe) has
2004 Feb 26
2
ATLAS threaded 64 bit (Opteron) - need *.so?
Using ATLAS with R is an old topic quite covered in the "R
Administration" manual (and by R's "configure" script
collection).
I still do not easily manage to build R properly on our new AMD
Opteron (2-processor).
I did work with the current Atlas 3.6.0, configured manually
(but "express" version) to build a threaded ATLAS version, and
successfully ran Atlas'
2006 May 18
1
Stuck in R installation, help~~
Hi all,
I'm stuck in the installation of R.
When I run configure, I got the error:
configure: error: --with-readline=yes (default) and headers/libs are
not available
I followed one answer in some post and use this:
./configure --with-prefix=/home/user/R-2.2.1 --with-readline=no
It successfully configured but I encountered another problem while make:
gcc -shared -L/usr/local/lib64 -o
2005 Aug 29
1
BLAS and ATLAS
On Mon, Aug 29, 2005 at 11:48:23AM +0100, Prof Brian Ripley wrote:
> On Mon, 29 Aug 2005, G?ran Brostr?m wrote:
> >LAPACK/BLAS routines call xerbla "if an input parameter has an
> >invalid value" (exact quote from XERBLA at Netlib). Other types of errors
> >are not printed (by xerbla), but it is up to the user to check the return
> >value of the argument
2006 May 03
1
Installation problem
I am trying to install R-2.3.0 on a 64bit linux box and encounter
several error during the make step. I'd appreciate any help. Error
messages follow:
[root at calculon R-2.3.0]# make
make[4]: Entering directory
`/state/partition1/apps/packages/R-2.3.0/src/modules/lapack'
gcc -shared -L/usr/local/lib64 -o libRlapack.so dlamc.o dlapack0.o
dlapack1.o dlapack2.o dlapack3.o cmplx.o
2010 May 14
1
Compiling R with ATLAS
Hello. I know almost nothing about Linux, so I apologize if the answer to
this is obvious.
I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu
10.04 64 bit). I configured with:
./configure --enable-R-shlib --enable-BLAS-shlib
--with-blas="-L/usr/local/atlas/lib -lf77blas -latlas"
--with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x
and I
2010 May 14
1
Compiling R with ATLAS
Hello. I know almost nothing about Linux, so I apologize if the answer to
this is obvious.
I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu
10.04 64 bit). I configured with:
./configure --enable-R-shlib --enable-BLAS-shlib
--with-blas="-L/usr/local/atlas/lib -lf77blas -latlas"
--with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x
and I
2010 May 28
2
Compiling R-2.11.0 with ATLAS-tuned BLAS and LAPACK
Hello. I am a Linux neophyte and know almost nothing ?about compiling,
so I would appreciate any help and advice y'all would care to offer.
I am trying to compile the 64 bit version of R using a tuned ATLAS and
LAPACK (ATLAS 3.9.24). I am running Ubunto 10.04 LTS (through wubi,
FWIW). The ATLAS and LAPACK files (atlas.so, f77blas.so, lapack.so,
and cblas.so) are sitting in the folder
2001 Jul 30
3
ATLAS
I thought I would try compiling R this time with the ATLAS libraries.
I have compiled ATLAS and I have the following libraries:
libatlas.a libf77blas.a libptcblas.a libtstatlas.a
libcblas.a liblapack.a libptf77blas.a
Is it sufficient to use ' --with-blas=libatlas.a ' when configuring or
do I need to specify any of the other libraries as well?
--
William D. McCoy
2008 Jul 08
1
R crash with ATLAS precompiled Rblas.dll on Windows XP Core2 Duo
I noticed a problem using R 2.7.1 on Windows XP SP2 with the precompiled
Atlas Rblas.dll. Running the code below causes R to crash. I started R
using Rgui --vanilla and am using the precompiled Atlas Rblas.dll from
cran.fhcrc.org dated 17-Jul-2007 05:04 for Core2 Duo.
The code that causes the crash:
x <- rnorm(100)
y <- rnorm(100)
z <- rnorm(100)
loess(z ~ x * y)
loess(z ~ x) does
2002 Jun 11
1
ATLAS & R unser Windows
Hi,
In rw-FAQ, there is a paragraph about optimizing R by using a fast ATLAS
library in place of the standard BLAS. It says: "BLAS support is supplied by
the single DLL `R_HOME\bin\Rblas.dll', and
you can add a fast BLAS just by replacing that." Do I need to recompile the
whole R with the option `USE_ATLAS = YES', or is it possible to compile only
Rblas.dll on each separate
2003 Nov 26
0
RE: 64-bit R on Opteron [was Re: [R] Windows R 1.8.0 hangs when M em Usage >1.8GB]
> From: Douglas Bates
>
> How does the Opteron perform on floating point? Can you try something
> like
>
> > mm = matrix(rnorm(1e6), nc = 1e3)
> > system.time(crossprod(mm))
> [1] 0.51 0.02 0.53 0.00 0.00
> > system.time(crossprod(mm))
> [1] 0.37 0.03 0.40 0.00 0.00
> > system.time(crossprod(mm))
> [1] 0.38 0.02 0.40 0.00 0.00
> >
2019 May 03
0
R problems with lapack with gfortran
Dear Thomas,
thank you for your input. I've debugged one of the packages and I
confirm that the breakage is related to passing of strings from C to
Fortran. Indeed, BLAS and LAPACK define a large number of subroutines
that take one or more explicit single-character strings as arguments.
Other than that, BLAS has only one function (xerbla), which takes a
string of unspecified length,
2005 Aug 28
2
xerbla called from BLAS routine (PR#8100)
Full_Name: G?ran Brostr?m
Version: R-2.1.1, 2.2.0
OS: Debian unstable
Submission from: (NULL) (213.65.9.59)
Some BLAS routines call xerbla for error messages, which results in a message
like
"LAPACK routine DGER gave error code -9".
Suggested solution: In
void F77_NAME(xerbla)(char *srname, int *info)
{
/* srname is not null-terminated. It should be 6 characters. */
char
2019 Apr 24
2
R problems with lapack with gfortran
Hi,
I have tried to pinpoint potential problems which could lead to the
LAPACK issues that are currently seen in R. I built the current R
trunk using
AR=gcc-ar RANLIB=gcc-ranlib ./configure --prefix=$HOME --enable-lto
--enable-BLAS-shlib=no --without-recommended-packages
and used this to find problem areas.
There are quite a few warnings that were flagged, due to mismatches
in function
2010 Nov 13
1
LAPACK lib problem, lme4, lastest R, Linux
I just dumped Vista off a laptop and installed Ubuntu 10.10 (latest
release) as the single operating system. I did all of the updates and
then installed emacs and ess. Next I installed R by following the the
usual instructions on the CRAN site. At this point all is working I am
now in the process of installing the packages that I normally have
installed. I am having a problem with the LAPACK
2010 Nov 14
3
LAPACK libraries improperly linked
I am not sure if this is an R development problem or not. I am starting
with completely clean OS and and installing the latest version of R
without trying to anything special but I am having trouble with the
LAPACK library linking when I try to build packages that require them.
I thought perhaps my problem may be if interest here.
I just dumped Vista off a laptop formatted the disk and