similar to: R and multithread

HI, I would like to update my DESeq package version on R-2-14 using bioclite() and get this message, could somebody help please? > biocLite("DESeq") BioC_mirror: 'http://www.bioconductor.org' Using R version 2.14, BiocInstaller version 1.2.1. Installing package(s) 'DESeq' Installing package(s) into ?/nfs/team82/nac/R-modules? (as ?lib? is unspecified) trying URL

Dear list, How can I detect a package is installed or not? If not, then install it. For example, in a script, I want to check the package DESeq is installed or not. If not, then I will using this script to install it. source("http://www.bioconductor.org/biocLite.R") biocLite("DESeq") The pseudo script would be like this: try: library("DESeq") catch:

Hello, I have RNAseq data, which I am trying to analyze with DESeq. My file (tab delimited .txt) appears to be correct: >head(myfile) VZ_w13 VZ_w14a VZ_w14b VZ_w15a VZ_w15b VZ_w16a ENSG00000253101 0 0 0 0 0 0 ENSG00000223972 0 0 0 0 0 0... However, when I try to analyze the data with >cds <-

Hello; Does anybody knows that R have a function for Generelized Negative Binomial model, something like "gnbreg" in "STATA" where dispersion parameter itself is a function of covaraites ? Thanks; [[alternative HTML version deleted]]

Is it possible to make samba produce a log at level 10 for only a specified user(s), I am trying (still) to figure out why Samba processes climb to 100% CPU and the user loses connection with MS Word & Excel files being locked. Have been dealing with this issue for quite some time now, but had to put it on the back burner for a while because we had little time to deal with it. Apprently only

Hi, is it possible to export the LDA model into a file so that it can be reused in R afterwards ? I have already checked the package "pmml" but does not seem to export LDA models. thanks, david

> str(data) 'data.frame': 250 obs. of 3 variables: $ student: chr "A" "B" "C" "D" ... $ data : num 20.2 20.4 22.5 22.1 23.3 ... $ param : Factor w/ 4 levels "AGE","SCHOOL",..: 1 1 1 1 1 1 1 1 1 1 Hi , i would like to split the dataframe so that each level of param is a column At the end it should look like

I'm new in Linux (Ubuntu 8.04) and pre-new in Wine. Apprently 1.0.1 is the latest stable release, but I can't find a way to get it by following any of the links on the WineHQ pages. I always end up at a page that's warning me I'll be downloading a beta version, even though I've clicked on a link that promises 1.0.1 All help welcome, but please don't point me to a tar.gz -

Hello all: I am using RJS templates to replace html on my pages. It works great in FF but I get an RJS error in Internet Explorer. I believe I had it working previously in IE, but for some reason it''s not working now. Any help would be greatly appreciated! Thanks, -- Randy Schmidt x@altorg.com 267.334.6833

Hello from Finland. I have couple problem to compile Samba 2.2.4 I need LDAP options, and when I run ./configure --with-ldapsam everything going ok, but when I run make It gives couple error messages, thats are below: Compiling passdb/pdb_ldap.c "passdb/pdb_ldap.c", line 76: undefined symbol: LDAP_OPT_X_TLS_HARD "passdb/pdb_ldap.c", line 96: undefined symbol: LDAP_OPT_SUCCESS

Hi, I am facing issue with the calls getCPUStats and getMemoryStats. Please find the error below. AttributeError: 'module' object has no attribute 'VIR_NODE_CPU_STATS_ALL_CPUS' >>> print con.getCPUStats(2, None, 0, 0) Traceback (most recent call last): File "<stdin>", line 1, in <module> File

I have configured my vsftpd instances to use virtual users and map them to a system user. So all uploads should be written with owner and group of this system user (let's call it ftpsystemuser). But in the the last weeks/months it appears that uploads are written twice, on instance as it should (owner and group of the system user used to map the virtual user that did the upload), and the

We try to use llvm to translate and generate the native code in parallel with multi-thread. But some various bugs will be triggered. We run the following code in multithread environment: ################## BasicBlock::Create(_CTX(), "dispatch", cpu->cur_func, 0); BranchInst::Create(bb_start, label_entry); cpu->exec_engine->getPointerToFunction ##################3 And cpu

Hi , I see in the libtheora 1.0 beta3 changelog that included new libtheoradec and libtheoraenc libraries supporting the new API from theora-exp , that it means that have multithread encoder? _________________________________________________________________ Express yourself instantly with MSN Messenger! Download today it's FREE! http://messenger.msn.click-url.com/go/onm00200471ave/direct/01/

Dose anyone know if R can handle multithread processing? Regards, Harvey -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat.math.ethz.ch

Hello R Pioneers, I sometimes use R on a dual CPU PC runing Linux and find that only 1 CPU is used even when no other user/process competes for resources. Can we make R uses both CPUs to have the job done sooner? I know this is probably asking too much for something that is free. Has anyone else thought about it? Thanks. Ming Chow

Hi Everyone, my goal is to create a service with multiple threads, each of them generating IR code and JIT'ing/executing it in their threads and some threads will share generated code through a code repository... 1. Is there a guideline/docu out there, which describes serialization of some LLVM objects, especially llvm::ExecutionEngine, llvm::ModuleProvider, llvm::Module? 2. Since

Quick related Q: Does the global lock of the JIT during code generation prevent concurrent execution of already JIT-ted code? Thanks. On Jan 12, 2009, at 9:34 AM, Gordon Henriksen wrote: > On Jan 12, 2009, at 11:10, Edgar Geisler wrote: > >> my goal is to create a service with multiple threads, each of them >> generating IR code and JIT'ing/executing it in their threads

On Jan 12, 2009, at 8:10 AM, Edgar Geisler wrote: > Hi Everyone, > > my goal is to create a service with multiple threads, each of them > generating IR code and JIT'ing/executing it in their threads > and some threads will share generated code through a code > repository... > > 1. Is there a guideline/docu out there, which describes > serialization of > some

Hi, All, Are there any supports about array region analysis both for serial program and multi-thread programs in LLVM ? I couldn't find them. Thanks, Pengcheng